Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7251 | 5' | -57.7 | NC_001900.1 | + | 233 | 1.08 | 0.000513 |
Target: 5'- cACACCAGCGCACACGGCACACCACACc -3' miRNA: 3'- -UGUGGUCGCGUGUGCCGUGUGGUGUG- -5' |
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7251 | 5' | -57.7 | NC_001900.1 | + | 572 | 0.72 | 0.239231 |
Target: 5'- uACGCCGcCGUuucGgGCGGCGCACUGCACu -3' miRNA: 3'- -UGUGGUcGCG---UgUGCCGUGUGGUGUG- -5' |
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7251 | 5' | -57.7 | NC_001900.1 | + | 1533 | 0.71 | 0.265334 |
Target: 5'- -aGCCAgGCGCAgGUGGUcCACCGCACg -3' miRNA: 3'- ugUGGU-CGCGUgUGCCGuGUGGUGUG- -5' |
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7251 | 5' | -57.7 | NC_001900.1 | + | 5570 | 0.66 | 0.521396 |
Target: 5'- -gACgCGGaGCAgGCGGCGCACCGaGCu -3' miRNA: 3'- ugUG-GUCgCGUgUGCCGUGUGGUgUG- -5' |
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7251 | 5' | -57.7 | NC_001900.1 | + | 5919 | 0.71 | 0.258599 |
Target: 5'- gACAUCAGCuCAgGCGGCAC-CCgaGCGCa -3' miRNA: 3'- -UGUGGUCGcGUgUGCCGUGuGG--UGUG- -5' |
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7251 | 5' | -57.7 | NC_001900.1 | + | 6299 | 0.69 | 0.348059 |
Target: 5'- uCGCUGGCGCucuCAaccugguCGGCGCAgCCGCACc -3' miRNA: 3'- uGUGGUCGCGu--GU-------GCCGUGU-GGUGUG- -5' |
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7251 | 5' | -57.7 | NC_001900.1 | + | 6358 | 0.67 | 0.449609 |
Target: 5'- -aACCAGCaGCGCAaggaUGGCACGCUgacCACc -3' miRNA: 3'- ugUGGUCG-CGUGU----GCCGUGUGGu--GUG- -5' |
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7251 | 5' | -57.7 | NC_001900.1 | + | 7860 | 0.76 | 0.124147 |
Target: 5'- uGCACCAGCagGUGCugGGCGCGCUgaucaagACGCg -3' miRNA: 3'- -UGUGGUCG--CGUGugCCGUGUGG-------UGUG- -5' |
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7251 | 5' | -57.7 | NC_001900.1 | + | 8315 | 0.69 | 0.3324 |
Target: 5'- cACGgCGGCGCuCGCGGCGCugACgACAUc -3' miRNA: 3'- -UGUgGUCGCGuGUGCCGUG--UGgUGUG- -5' |
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7251 | 5' | -57.7 | NC_001900.1 | + | 8638 | 0.67 | 0.463548 |
Target: 5'- gGCACCGGCGCcccgcugguguuccuGCACGGgCucucggugaGCGCCAagGCg -3' miRNA: 3'- -UGUGGUCGCG---------------UGUGCC-G---------UGUGGUg-UG- -5' |
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7251 | 5' | -57.7 | NC_001900.1 | + | 9336 | 0.66 | 0.521396 |
Target: 5'- gAC-CCGGaGCugGCGGCugaucuCAUCGCGCu -3' miRNA: 3'- -UGuGGUCgCGugUGCCGu-----GUGGUGUG- -5' |
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7251 | 5' | -57.7 | NC_001900.1 | + | 9612 | 0.74 | 0.159899 |
Target: 5'- gACGCCaAGUaucccgGCcCACGGUGCGCCACGCa -3' miRNA: 3'- -UGUGG-UCG------CGuGUGCCGUGUGGUGUG- -5' |
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7251 | 5' | -57.7 | NC_001900.1 | + | 11145 | 0.66 | 0.542745 |
Target: 5'- aGCGCCucauccacggugAGCGCAacaagaacUACGGC-CACC-CGCg -3' miRNA: 3'- -UGUGG------------UCGCGU--------GUGCCGuGUGGuGUG- -5' |
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7251 | 5' | -57.7 | NC_001900.1 | + | 12799 | 0.68 | 0.411109 |
Target: 5'- cCGCUGGCGaugaaggaACugGGCuccaagaacgaGCGCCACGCa -3' miRNA: 3'- uGUGGUCGCg-------UGugCCG-----------UGUGGUGUG- -5' |
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7251 | 5' | -57.7 | NC_001900.1 | + | 13405 | 0.67 | 0.449609 |
Target: 5'- cCGCCAGagGCACAUGGCGCugguuCCGgGg -3' miRNA: 3'- uGUGGUCg-CGUGUGCCGUGu----GGUgUg -5' |
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7251 | 5' | -57.7 | NC_001900.1 | + | 13678 | 0.66 | 0.532031 |
Target: 5'- cCGCCGGgGuuucucCugGCGGuCACACCugACc -3' miRNA: 3'- uGUGGUCgC------GugUGCC-GUGUGGugUG- -5' |
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7251 | 5' | -57.7 | NC_001900.1 | + | 15663 | 0.77 | 0.093763 |
Target: 5'- uCGCCAGCGCGC-CGGUcgACACCGCu- -3' miRNA: 3'- uGUGGUCGCGUGuGCCG--UGUGGUGug -5' |
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7251 | 5' | -57.7 | NC_001900.1 | + | 17654 | 0.72 | 0.239231 |
Target: 5'- gACGCCAGCGUucaccACGCuGGCcgACACCcucgGCACg -3' miRNA: 3'- -UGUGGUCGCG-----UGUG-CCG--UGUGG----UGUG- -5' |
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7251 | 5' | -57.7 | NC_001900.1 | + | 18664 | 0.68 | 0.401808 |
Target: 5'- -gGCCGGC-CGUGCGGCGCugCAgGCg -3' miRNA: 3'- ugUGGUCGcGUGUGCCGUGugGUgUG- -5' |
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7251 | 5' | -57.7 | NC_001900.1 | + | 21484 | 0.66 | 0.542745 |
Target: 5'- uCACCcucucGGCGUuCGCGGC-CAUCGCAg -3' miRNA: 3'- uGUGG-----UCGCGuGUGCCGuGUGGUGUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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