Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7251 | 5' | -57.7 | NC_001900.1 | + | 48560 | 0.68 | 0.374721 |
Target: 5'- gGCACgUAGgGCACGugUGGCAgGCCAgACg -3' miRNA: 3'- -UGUG-GUCgCGUGU--GCCGUgUGGUgUG- -5' |
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7251 | 5' | -57.7 | NC_001900.1 | + | 47721 | 0.72 | 0.23305 |
Target: 5'- cCGCCAGCGCguugaACGCcGCACGCUucuGCGCg -3' miRNA: 3'- uGUGGUCGCG-----UGUGcCGUGUGG---UGUG- -5' |
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7251 | 5' | -57.7 | NC_001900.1 | + | 46029 | 0.7 | 0.293696 |
Target: 5'- uGC-CCAGcCGCcgaGCGCGGCGCAUgGCAa -3' miRNA: 3'- -UGuGGUC-GCG---UGUGCCGUGUGgUGUg -5' |
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7251 | 5' | -57.7 | NC_001900.1 | + | 45667 | 0.69 | 0.354809 |
Target: 5'- ---aCGGCGCACAcgcucacggccggcCGGCcuCACCACACc -3' miRNA: 3'- ugugGUCGCGUGU--------------GCCGu-GUGGUGUG- -5' |
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7251 | 5' | -57.7 | NC_001900.1 | + | 44321 | 0.76 | 0.124147 |
Target: 5'- -uGCCAGCGCgaGCGCGGCACaugucguggacccACUGCGCg -3' miRNA: 3'- ugUGGUCGCG--UGUGCCGUG-------------UGGUGUG- -5' |
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7251 | 5' | -57.7 | NC_001900.1 | + | 42780 | 0.71 | 0.270132 |
Target: 5'- aGCGCCAGCGaCGaugucgccgauguuCGCGGCuGCGCC-CGCg -3' miRNA: 3'- -UGUGGUCGC-GU--------------GUGCCG-UGUGGuGUG- -5' |
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7251 | 5' | -57.7 | NC_001900.1 | + | 34702 | 0.68 | 0.411109 |
Target: 5'- -gACCGGCGaACACcGCcugcCACCACACa -3' miRNA: 3'- ugUGGUCGCgUGUGcCGu---GUGGUGUG- -5' |
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7251 | 5' | -57.7 | NC_001900.1 | + | 33305 | 0.69 | 0.348898 |
Target: 5'- -gGCCGGCGCAgGCcGCACcuCCACGg -3' miRNA: 3'- ugUGGUCGCGUgUGcCGUGu-GGUGUg -5' |
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7251 | 5' | -57.7 | NC_001900.1 | + | 33230 | 0.75 | 0.131675 |
Target: 5'- gACGCUGGCGUACuuCGGCACcaGCCACGg -3' miRNA: 3'- -UGUGGUCGCGUGu-GCCGUG--UGGUGUg -5' |
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7251 | 5' | -57.7 | NC_001900.1 | + | 31278 | 0.67 | 0.449609 |
Target: 5'- cCACCAGCGUgggcaGCAuCGGCugaauCGCCugcaGCGCa -3' miRNA: 3'- uGUGGUCGCG-----UGU-GCCGu----GUGG----UGUG- -5' |
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7251 | 5' | -57.7 | NC_001900.1 | + | 30997 | 0.68 | 0.420543 |
Target: 5'- cGCGCCAGCcuGCAcCACGGcCGCAgCCAgGu -3' miRNA: 3'- -UGUGGUCG--CGU-GUGCC-GUGU-GGUgUg -5' |
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7251 | 5' | -57.7 | NC_001900.1 | + | 30498 | 0.69 | 0.3324 |
Target: 5'- gGCACCAGCgGUGC-CaGCGCACUGCAg -3' miRNA: 3'- -UGUGGUCG-CGUGuGcCGUGUGGUGUg -5' |
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7251 | 5' | -57.7 | NC_001900.1 | + | 25757 | 0.67 | 0.433967 |
Target: 5'- cGCGCCccGGCGCACGCGGagcuucaucgucuCGCCGuCAUc -3' miRNA: 3'- -UGUGG--UCGCGUGUGCCgu-----------GUGGU-GUG- -5' |
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7251 | 5' | -57.7 | NC_001900.1 | + | 24965 | 0.66 | 0.542745 |
Target: 5'- cGCACCuGGUG-GCgGCGGCGCAgCCGCAa -3' miRNA: 3'- -UGUGG-UCGCgUG-UGCCGUGU-GGUGUg -5' |
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7251 | 5' | -57.7 | NC_001900.1 | + | 24768 | 0.77 | 0.093763 |
Target: 5'- -gACCGGCGCGgGCGGCaaagggggcgACACCACAg -3' miRNA: 3'- ugUGGUCGCGUgUGCCG----------UGUGGUGUg -5' |
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7251 | 5' | -57.7 | NC_001900.1 | + | 21484 | 0.66 | 0.542745 |
Target: 5'- uCACCcucucGGCGUuCGCGGC-CAUCGCAg -3' miRNA: 3'- uGUGG-----UCGCGuGUGCCGuGUGGUGUg -5' |
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7251 | 5' | -57.7 | NC_001900.1 | + | 18664 | 0.68 | 0.401808 |
Target: 5'- -gGCCGGC-CGUGCGGCGCugCAgGCg -3' miRNA: 3'- ugUGGUCGcGUGUGCCGUGugGUgUG- -5' |
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7251 | 5' | -57.7 | NC_001900.1 | + | 17654 | 0.72 | 0.239231 |
Target: 5'- gACGCCAGCGUucaccACGCuGGCcgACACCcucgGCACg -3' miRNA: 3'- -UGUGGUCGCG-----UGUG-CCG--UGUGG----UGUG- -5' |
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7251 | 5' | -57.7 | NC_001900.1 | + | 15663 | 0.77 | 0.093763 |
Target: 5'- uCGCCAGCGCGC-CGGUcgACACCGCu- -3' miRNA: 3'- uGUGGUCGCGUGuGCCG--UGUGGUGug -5' |
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7251 | 5' | -57.7 | NC_001900.1 | + | 13678 | 0.66 | 0.532031 |
Target: 5'- cCGCCGGgGuuucucCugGCGGuCACACCugACc -3' miRNA: 3'- uGUGGUCgC------GugUGCC-GUGUGGugUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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