miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7251 5' -57.7 NC_001900.1 + 11145 0.66 0.542745
Target:  5'- aGCGCCucauccacggugAGCGCAacaagaacUACGGC-CACC-CGCg -3'
miRNA:   3'- -UGUGG------------UCGCGU--------GUGCCGuGUGGuGUG- -5'
7251 5' -57.7 NC_001900.1 + 233 1.08 0.000513
Target:  5'- cACACCAGCGCACACGGCACACCACACc -3'
miRNA:   3'- -UGUGGUCGCGUGUGCCGUGUGGUGUG- -5'
7251 5' -57.7 NC_001900.1 + 15663 0.77 0.093763
Target:  5'- uCGCCAGCGCGC-CGGUcgACACCGCu- -3'
miRNA:   3'- uGUGGUCGCGUGuGCCG--UGUGGUGug -5'
7251 5' -57.7 NC_001900.1 + 7860 0.76 0.124147
Target:  5'- uGCACCAGCagGUGCugGGCGCGCUgaucaagACGCg -3'
miRNA:   3'- -UGUGGUCG--CGUGugCCGUGUGG-------UGUG- -5'
7251 5' -57.7 NC_001900.1 + 44321 0.76 0.124147
Target:  5'- -uGCCAGCGCgaGCGCGGCACaugucguggacccACUGCGCg -3'
miRNA:   3'- ugUGGUCGCG--UGUGCCGUG-------------UGGUGUG- -5'
7251 5' -57.7 NC_001900.1 + 9612 0.74 0.159899
Target:  5'- gACGCCaAGUaucccgGCcCACGGUGCGCCACGCa -3'
miRNA:   3'- -UGUGG-UCG------CGuGUGCCGUGUGGUGUG- -5'
7251 5' -57.7 NC_001900.1 + 47721 0.72 0.23305
Target:  5'- cCGCCAGCGCguugaACGCcGCACGCUucuGCGCg -3'
miRNA:   3'- uGUGGUCGCG-----UGUGcCGUGUGG---UGUG- -5'
7251 5' -57.7 NC_001900.1 + 5919 0.71 0.258599
Target:  5'- gACAUCAGCuCAgGCGGCAC-CCgaGCGCa -3'
miRNA:   3'- -UGUGGUCGcGUgUGCCGUGuGG--UGUG- -5'
7251 5' -57.7 NC_001900.1 + 42780 0.71 0.270132
Target:  5'- aGCGCCAGCGaCGaugucgccgauguuCGCGGCuGCGCC-CGCg -3'
miRNA:   3'- -UGUGGUCGC-GU--------------GUGCCG-UGUGGuGUG- -5'
7251 5' -57.7 NC_001900.1 + 8315 0.69 0.3324
Target:  5'- cACGgCGGCGCuCGCGGCGCugACgACAUc -3'
miRNA:   3'- -UGUgGUCGCGuGUGCCGUG--UGgUGUG- -5'
7251 5' -57.7 NC_001900.1 + 9336 0.66 0.521396
Target:  5'- gAC-CCGGaGCugGCGGCugaucuCAUCGCGCu -3'
miRNA:   3'- -UGuGGUCgCGugUGCCGu-----GUGGUGUG- -5'
7251 5' -57.7 NC_001900.1 + 5570 0.66 0.521396
Target:  5'- -gACgCGGaGCAgGCGGCGCACCGaGCu -3'
miRNA:   3'- ugUG-GUCgCGUgUGCCGUGUGGUgUG- -5'
7251 5' -57.7 NC_001900.1 + 8638 0.67 0.463548
Target:  5'- gGCACCGGCGCcccgcugguguuccuGCACGGgCucucggugaGCGCCAagGCg -3'
miRNA:   3'- -UGUGGUCGCG---------------UGUGCC-G---------UGUGGUg-UG- -5'
7251 5' -57.7 NC_001900.1 + 13405 0.67 0.449609
Target:  5'- cCGCCAGagGCACAUGGCGCugguuCCGgGg -3'
miRNA:   3'- uGUGGUCg-CGUGUGCCGUGu----GGUgUg -5'
7251 5' -57.7 NC_001900.1 + 31278 0.67 0.449609
Target:  5'- cCACCAGCGUgggcaGCAuCGGCugaauCGCCugcaGCGCa -3'
miRNA:   3'- uGUGGUCGCG-----UGU-GCCGu----GUGG----UGUG- -5'
7251 5' -57.7 NC_001900.1 + 30997 0.68 0.420543
Target:  5'- cGCGCCAGCcuGCAcCACGGcCGCAgCCAgGu -3'
miRNA:   3'- -UGUGGUCG--CGU-GUGCC-GUGU-GGUgUg -5'
7251 5' -57.7 NC_001900.1 + 12799 0.68 0.411109
Target:  5'- cCGCUGGCGaugaaggaACugGGCuccaagaacgaGCGCCACGCa -3'
miRNA:   3'- uGUGGUCGCg-------UGugCCG-----------UGUGGUGUG- -5'
7251 5' -57.7 NC_001900.1 + 24965 0.66 0.542745
Target:  5'- cGCACCuGGUG-GCgGCGGCGCAgCCGCAa -3'
miRNA:   3'- -UGUGG-UCGCgUG-UGCCGUGU-GGUGUg -5'
7251 5' -57.7 NC_001900.1 + 33230 0.75 0.131675
Target:  5'- gACGCUGGCGUACuuCGGCACcaGCCACGg -3'
miRNA:   3'- -UGUGGUCGCGUGu-GCCGUG--UGGUGUg -5'
7251 5' -57.7 NC_001900.1 + 572 0.72 0.239231
Target:  5'- uACGCCGcCGUuucGgGCGGCGCACUGCACu -3'
miRNA:   3'- -UGUGGUcGCG---UgUGCCGUGUGGUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.