miRNA display CGI


Results 1 - 20 of 36 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7252 5' -54.3 NC_001900.1 + 116 1.11 0.000825
Target:  5'- cCCAGCAACCGAGGACACAUGCACGCAu -3'
miRNA:   3'- -GGUCGUUGGCUCCUGUGUACGUGCGU- -5'
7252 5' -54.3 NC_001900.1 + 434 0.68 0.584185
Target:  5'- aCAGCAcccauACCGGGcACAUaacgagcagccuAUGCACGCGg -3'
miRNA:   3'- gGUCGU-----UGGCUCcUGUG------------UACGUGCGU- -5'
7252 5' -54.3 NC_001900.1 + 1096 0.68 0.617641
Target:  5'- gCGGCGGugccccuggaacCCGAGGACGCAacaGCACccgGCAa -3'
miRNA:   3'- gGUCGUU------------GGCUCCUGUGUa--CGUG---CGU- -5'
7252 5' -54.3 NC_001900.1 + 1193 0.73 0.320133
Target:  5'- -aAGCGGCCGGGGcgguuuagGCACcgGCaACGCAg -3'
miRNA:   3'- ggUCGUUGGCUCC--------UGUGuaCG-UGCGU- -5'
7252 5' -54.3 NC_001900.1 + 1209 0.66 0.749709
Target:  5'- aCCgAGCAcCgCGAGGuuCGCGUcacgGCACGCGa -3'
miRNA:   3'- -GG-UCGUuG-GCUCCu-GUGUA----CGUGCGU- -5'
7252 5' -54.3 NC_001900.1 + 2702 0.68 0.584185
Target:  5'- gCCAGCGGCCaGAGGcuuCGCGacgacugGCGCgGCAa -3'
miRNA:   3'- -GGUCGUUGG-CUCCu--GUGUa------CGUG-CGU- -5'
7252 5' -54.3 NC_001900.1 + 3406 0.68 0.583075
Target:  5'- aCCAGguGuacaucaCCGGGGcCACAggugGCACGUAc -3'
miRNA:   3'- -GGUCguU-------GGCUCCuGUGUa---CGUGCGU- -5'
7252 5' -54.3 NC_001900.1 + 3643 0.66 0.7391
Target:  5'- cCCGGCAugGCCGGuGGAgGCuucagGUACGUc -3'
miRNA:   3'- -GGUCGU--UGGCU-CCUgUGua---CGUGCGu -5'
7252 5' -54.3 NC_001900.1 + 4367 0.67 0.684619
Target:  5'- gCCAGCGGCCuggcugccgcaGGGGAcCGCGUucCACGCu -3'
miRNA:   3'- -GGUCGUUGG-----------CUCCU-GUGUAc-GUGCGu -5'
7252 5' -54.3 NC_001900.1 + 4782 0.69 0.52828
Target:  5'- aCCGGgaacCAACCGGGaGACgacuuccagcucgGCGUGUACGCGc -3'
miRNA:   3'- -GGUC----GUUGGCUC-CUG-------------UGUACGUGCGU- -5'
7252 5' -54.3 NC_001900.1 + 5011 0.71 0.456142
Target:  5'- aCGGCGGCgGGGGccgguacucGCACAccgcuUGCACGCu -3'
miRNA:   3'- gGUCGUUGgCUCC---------UGUGU-----ACGUGCGu -5'
7252 5' -54.3 NC_001900.1 + 5556 0.74 0.274913
Target:  5'- uCCAGCGAgCGAuGGACGCGgagcagGCgGCGCAc -3'
miRNA:   3'- -GGUCGUUgGCU-CCUGUGUa-----CG-UGCGU- -5'
7252 5' -54.3 NC_001900.1 + 6359 0.67 0.673521
Target:  5'- aCCAGCAGCgCaAGGAUg---GCACGCu -3'
miRNA:   3'- -GGUCGUUG-GcUCCUGuguaCGUGCGu -5'
7252 5' -54.3 NC_001900.1 + 8923 0.68 0.617641
Target:  5'- gCGGCAGCgGuccugcuGGACGCGgcUGCugGCc -3'
miRNA:   3'- gGUCGUUGgCu------CCUGUGU--ACGugCGu -5'
7252 5' -54.3 NC_001900.1 + 13246 0.77 0.194615
Target:  5'- gCCuGCGACCGAGGAguaaCACAUGgccUACGCGa -3'
miRNA:   3'- -GGuCGUUGGCUCCU----GUGUAC---GUGCGU- -5'
7252 5' -54.3 NC_001900.1 + 14515 0.69 0.525048
Target:  5'- aUCGGCGGCaccgucucguaagGAGGACACAUGgGgGCGa -3'
miRNA:   3'- -GGUCGUUGg------------CUCCUGUGUACgUgCGU- -5'
7252 5' -54.3 NC_001900.1 + 14704 0.67 0.662381
Target:  5'- cCCuGCAACCuAGGGCACAU-CAaccuCGCGg -3'
miRNA:   3'- -GGuCGUUGGcUCCUGUGUAcGU----GCGU- -5'
7252 5' -54.3 NC_001900.1 + 16255 0.68 0.584185
Target:  5'- gUCAGCAguACCGAGGuugggaugaGgACcgGUACGCGc -3'
miRNA:   3'- -GGUCGU--UGGCUCC---------UgUGuaCGUGCGU- -5'
7252 5' -54.3 NC_001900.1 + 17019 0.67 0.695667
Target:  5'- gCGGCAGCCGAGacCAUgAUGCcCGCGc -3'
miRNA:   3'- gGUCGUUGGCUCcuGUG-UACGuGCGU- -5'
7252 5' -54.3 NC_001900.1 + 17518 0.69 0.529359
Target:  5'- -aGGCGuACCGGGGugGCAUGaa-GCAg -3'
miRNA:   3'- ggUCGU-UGGCUCCugUGUACgugCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.