Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7252 | 5' | -54.3 | NC_001900.1 | + | 46031 | 0.66 | 0.749709 |
Target: 5'- cCCAGCcGCCGAGcgcGGCGCAUG---GCAa -3' miRNA: 3'- -GGUCGuUGGCUC---CUGUGUACgugCGU- -5' |
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7252 | 5' | -54.3 | NC_001900.1 | + | 44030 | 0.66 | 0.70665 |
Target: 5'- -gGGCAACUGuAGGACACAU-CACa-- -3' miRNA: 3'- ggUCGUUGGC-UCCUGUGUAcGUGcgu -5' |
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7252 | 5' | -54.3 | NC_001900.1 | + | 44008 | 0.67 | 0.681295 |
Target: 5'- aCCgGGCcACCGGGGAUguccaucgucaucaGCGUGCAaGCGg -3' miRNA: 3'- -GG-UCGuUGGCUCCUG--------------UGUACGUgCGU- -5' |
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7252 | 5' | -54.3 | NC_001900.1 | + | 43049 | 0.7 | 0.507942 |
Target: 5'- uCCAGCucGCgGAGGuCACcgGCuCGCGc -3' miRNA: 3'- -GGUCGu-UGgCUCCuGUGuaCGuGCGU- -5' |
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7252 | 5' | -54.3 | NC_001900.1 | + | 42850 | 0.7 | 0.486901 |
Target: 5'- cCCAGgauGCCGGGGACGagaGUGCcgACGUAg -3' miRNA: 3'- -GGUCgu-UGGCUCCUGUg--UACG--UGCGU- -5' |
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7252 | 5' | -54.3 | NC_001900.1 | + | 40134 | 0.71 | 0.436227 |
Target: 5'- gCCAGCAGCCGcguccagcAGGAC-CGcUGC-CGCGa -3' miRNA: 3'- -GGUCGUUGGC--------UCCUGuGU-ACGuGCGU- -5' |
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7252 | 5' | -54.3 | NC_001900.1 | + | 39446 | 0.71 | 0.416823 |
Target: 5'- gCCGGCcgaccgauCCGAGGAUcgaucucggcguACAUGCGCGUc -3' miRNA: 3'- -GGUCGuu------GGCUCCUG------------UGUACGUGCGu -5' |
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7252 | 5' | -54.3 | NC_001900.1 | + | 38936 | 0.7 | 0.497371 |
Target: 5'- cUCAGguACUGGGGAgGgaguccCGUGUACGCAg -3' miRNA: 3'- -GGUCguUGGCUCCUgU------GUACGUGCGU- -5' |
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7252 | 5' | -54.3 | NC_001900.1 | + | 38065 | 0.71 | 0.436227 |
Target: 5'- aCCGG-AACCGAGGACGCcuucaGUACGUc -3' miRNA: 3'- -GGUCgUUGGCUCCUGUGua---CGUGCGu -5' |
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7252 | 5' | -54.3 | NC_001900.1 | + | 35195 | 0.67 | 0.661266 |
Target: 5'- aCCAGCucuUCGGGGuagacgaGCACcgGCugGUAc -3' miRNA: 3'- -GGUCGuu-GGCUCC-------UGUGuaCGugCGU- -5' |
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7252 | 5' | -54.3 | NC_001900.1 | + | 32431 | 0.66 | 0.717558 |
Target: 5'- aCAGCuccguaaacGCCGGGGGCACAUGgAUucccaGCu -3' miRNA: 3'- gGUCGu--------UGGCUCCUGUGUACgUG-----CGu -5' |
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7252 | 5' | -54.3 | NC_001900.1 | + | 23381 | 0.66 | 0.717558 |
Target: 5'- uCCaAGCGGCCGGuGAC-CGUGC-CGCc -3' miRNA: 3'- -GG-UCGUUGGCUcCUGuGUACGuGCGu -5' |
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7252 | 5' | -54.3 | NC_001900.1 | + | 23026 | 0.7 | 0.486901 |
Target: 5'- gCAGUAcCCGAcGGCACGgcgGCACGCc -3' miRNA: 3'- gGUCGUuGGCUcCUGUGUa--CGUGCGu -5' |
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7252 | 5' | -54.3 | NC_001900.1 | + | 21060 | 0.68 | 0.606463 |
Target: 5'- aCCAGC--CCGAGGGCucc-GCACGUc -3' miRNA: 3'- -GGUCGuuGGCUCCUGuguaCGUGCGu -5' |
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7252 | 5' | -54.3 | NC_001900.1 | + | 20888 | 0.69 | 0.518607 |
Target: 5'- gCCAGCucGCCGAGG-CGC-UGCugGa- -3' miRNA: 3'- -GGUCGu-UGGCUCCuGUGuACGugCgu -5' |
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7252 | 5' | -54.3 | NC_001900.1 | + | 17685 | 0.66 | 0.7391 |
Target: 5'- cUCGGCAcgauGCUGAcGGGCGCucUGCAgGCu -3' miRNA: 3'- -GGUCGU----UGGCU-CCUGUGu-ACGUgCGu -5' |
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7252 | 5' | -54.3 | NC_001900.1 | + | 17518 | 0.69 | 0.529359 |
Target: 5'- -aGGCGuACCGGGGugGCAUGaa-GCAg -3' miRNA: 3'- ggUCGU-UGGCUCCugUGUACgugCGU- -5' |
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7252 | 5' | -54.3 | NC_001900.1 | + | 17019 | 0.67 | 0.695667 |
Target: 5'- gCGGCAGCCGAGacCAUgAUGCcCGCGc -3' miRNA: 3'- gGUCGUUGGCUCcuGUG-UACGuGCGU- -5' |
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7252 | 5' | -54.3 | NC_001900.1 | + | 16255 | 0.68 | 0.584185 |
Target: 5'- gUCAGCAguACCGAGGuugggaugaGgACcgGUACGCGc -3' miRNA: 3'- -GGUCGU--UGGCUCC---------UgUGuaCGUGCGU- -5' |
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7252 | 5' | -54.3 | NC_001900.1 | + | 14704 | 0.67 | 0.662381 |
Target: 5'- cCCuGCAACCuAGGGCACAU-CAaccuCGCGg -3' miRNA: 3'- -GGuCGUUGGcUCCUGUGUAcGU----GCGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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