miRNA display CGI


Results 21 - 36 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7252 5' -54.3 NC_001900.1 + 17518 0.69 0.529359
Target:  5'- -aGGCGuACCGGGGugGCAUGaa-GCAg -3'
miRNA:   3'- ggUCGU-UGGCUCCugUGUACgugCGU- -5'
7252 5' -54.3 NC_001900.1 + 4782 0.69 0.52828
Target:  5'- aCCGGgaacCAACCGGGaGACgacuuccagcucgGCGUGUACGCGc -3'
miRNA:   3'- -GGUC----GUUGGCUC-CUG-------------UGUACGUGCGU- -5'
7252 5' -54.3 NC_001900.1 + 14515 0.69 0.525048
Target:  5'- aUCGGCGGCaccgucucguaagGAGGACACAUGgGgGCGa -3'
miRNA:   3'- -GGUCGUUGg------------CUCCUGUGUACgUgCGU- -5'
7252 5' -54.3 NC_001900.1 + 20888 0.69 0.518607
Target:  5'- gCCAGCucGCCGAGG-CGC-UGCugGa- -3'
miRNA:   3'- -GGUCGu-UGGCUCCuGUGuACGugCgu -5'
7252 5' -54.3 NC_001900.1 + 43049 0.7 0.507942
Target:  5'- uCCAGCucGCgGAGGuCACcgGCuCGCGc -3'
miRNA:   3'- -GGUCGu-UGgCUCCuGUGuaCGuGCGU- -5'
7252 5' -54.3 NC_001900.1 + 38936 0.7 0.497371
Target:  5'- cUCAGguACUGGGGAgGgaguccCGUGUACGCAg -3'
miRNA:   3'- -GGUCguUGGCUCCUgU------GUACGUGCGU- -5'
7252 5' -54.3 NC_001900.1 + 23026 0.7 0.486901
Target:  5'- gCAGUAcCCGAcGGCACGgcgGCACGCc -3'
miRNA:   3'- gGUCGUuGGCUcCUGUGUa--CGUGCGu -5'
7252 5' -54.3 NC_001900.1 + 42850 0.7 0.486901
Target:  5'- cCCAGgauGCCGGGGACGagaGUGCcgACGUAg -3'
miRNA:   3'- -GGUCgu-UGGCUCCUGUg--UACG--UGCGU- -5'
7252 5' -54.3 NC_001900.1 + 5011 0.71 0.456142
Target:  5'- aCGGCGGCgGGGGccgguacucGCACAccgcuUGCACGCu -3'
miRNA:   3'- gGUCGUUGgCUCC---------UGUGU-----ACGUGCGu -5'
7252 5' -54.3 NC_001900.1 + 38065 0.71 0.436227
Target:  5'- aCCGG-AACCGAGGACGCcuucaGUACGUc -3'
miRNA:   3'- -GGUCgUUGGCUCCUGUGua---CGUGCGu -5'
7252 5' -54.3 NC_001900.1 + 40134 0.71 0.436227
Target:  5'- gCCAGCAGCCGcguccagcAGGAC-CGcUGC-CGCGa -3'
miRNA:   3'- -GGUCGUUGGC--------UCCUGuGU-ACGuGCGU- -5'
7252 5' -54.3 NC_001900.1 + 39446 0.71 0.416823
Target:  5'- gCCGGCcgaccgauCCGAGGAUcgaucucggcguACAUGCGCGUc -3'
miRNA:   3'- -GGUCGuu------GGCUCCUG------------UGUACGUGCGu -5'
7252 5' -54.3 NC_001900.1 + 1193 0.73 0.320133
Target:  5'- -aAGCGGCCGGGGcgguuuagGCACcgGCaACGCAg -3'
miRNA:   3'- ggUCGUUGGCUCC--------UGUGuaCG-UGCGU- -5'
7252 5' -54.3 NC_001900.1 + 5556 0.74 0.274913
Target:  5'- uCCAGCGAgCGAuGGACGCGgagcagGCgGCGCAc -3'
miRNA:   3'- -GGUCGUUgGCU-CCUGUGUa-----CG-UGCGU- -5'
7252 5' -54.3 NC_001900.1 + 13246 0.77 0.194615
Target:  5'- gCCuGCGACCGAGGAguaaCACAUGgccUACGCGa -3'
miRNA:   3'- -GGuCGUUGGCUCCU----GUGUAC---GUGCGU- -5'
7252 5' -54.3 NC_001900.1 + 116 1.11 0.000825
Target:  5'- cCCAGCAACCGAGGACACAUGCACGCAu -3'
miRNA:   3'- -GGUCGUUGGCUCCUGUGUACGUGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.