Results 1 - 20 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7253 | 3' | -62.7 | NC_001900.1 | + | 68 | 1.11 | 0.0001 |
Target: 5'- gAGCGCCUCGCCCAGGCGCUGUGAGCCa -3' miRNA: 3'- -UCGCGGAGCGGGUCCGCGACACUCGG- -5' |
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7253 | 3' | -62.7 | NC_001900.1 | + | 26147 | 0.79 | 0.031431 |
Target: 5'- cGC-CCUUGUCCGGGCGUgGUGGGCCg -3' miRNA: 3'- uCGcGGAGCGGGUCCGCGaCACUCGG- -5' |
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7253 | 3' | -62.7 | NC_001900.1 | + | 3185 | 0.71 | 0.13771 |
Target: 5'- -uCGCCUUGgCgAGGCGCUGcuUGAGCa -3' miRNA: 3'- ucGCGGAGCgGgUCCGCGAC--ACUCGg -5' |
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7253 | 3' | -62.7 | NC_001900.1 | + | 48622 | 0.71 | 0.13771 |
Target: 5'- aGGCuGCUcguuaugUGCCCgguauGGGUGCUGUGAGCUg -3' miRNA: 3'- -UCG-CGGa------GCGGG-----UCCGCGACACUCGG- -5' |
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7253 | 3' | -62.7 | NC_001900.1 | + | 23212 | 0.71 | 0.141455 |
Target: 5'- uGGU-CCUCGCCCGGGCuGCgcccGUcaGGGCCg -3' miRNA: 3'- -UCGcGGAGCGGGUCCG-CGa---CA--CUCGG- -5' |
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7253 | 3' | -62.7 | NC_001900.1 | + | 36580 | 0.71 | 0.145293 |
Target: 5'- cAGCGgacgagaUCGUCCAGGaGCUGUGGGUCu -3' miRNA: 3'- -UCGCgg-----AGCGGGUCCgCGACACUCGG- -5' |
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7253 | 3' | -62.7 | NC_001900.1 | + | 3118 | 0.7 | 0.169482 |
Target: 5'- cAGCGCCUCGCCaAGGCGagcggcgggggGUGAugGUCc -3' miRNA: 3'- -UCGCGGAGCGGgUCCGCga---------CACU--CGG- -5' |
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7253 | 3' | -62.7 | NC_001900.1 | + | 15548 | 0.69 | 0.189189 |
Target: 5'- cGGCcUCUCG-CCGGGCGgUG-GAGCCu -3' miRNA: 3'- -UCGcGGAGCgGGUCCGCgACaCUCGG- -5' |
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7253 | 3' | -62.7 | NC_001900.1 | + | 137 | 0.69 | 0.194169 |
Target: 5'- cAGCGCCUgGgCgAGGCGCUcuagcGUcGGCCc -3' miRNA: 3'- -UCGCGGAgCgGgUCCGCGA-----CAcUCGG- -5' |
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7253 | 3' | -62.7 | NC_001900.1 | + | 41710 | 0.69 | 0.199263 |
Target: 5'- cAGCgGCCUUGCUCAGGUuCUcUGAGgCCa -3' miRNA: 3'- -UCG-CGGAGCGGGUCCGcGAcACUC-GG- -5' |
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7253 | 3' | -62.7 | NC_001900.1 | + | 23142 | 0.68 | 0.224788 |
Target: 5'- gGGCGCa--GCCCGGGCGa-GgaccagaccgucguUGAGCCg -3' miRNA: 3'- -UCGCGgagCGGGUCCGCgaC--------------ACUCGG- -5' |
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7253 | 3' | -62.7 | NC_001900.1 | + | 28251 | 0.67 | 0.244328 |
Target: 5'- aGGCcagCUCGCCgAGGCGCUGcugGAGaaCCa -3' miRNA: 3'- -UCGcg-GAGCGGgUCCGCGACa--CUC--GG- -5' |
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7253 | 3' | -62.7 | NC_001900.1 | + | 25752 | 0.67 | 0.244328 |
Target: 5'- cGgGCCgCGCCCcGGCGCacgcgGAGCUu -3' miRNA: 3'- uCgCGGaGCGGGuCCGCGaca--CUCGG- -5' |
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7253 | 3' | -62.7 | NC_001900.1 | + | 33024 | 0.67 | 0.256845 |
Target: 5'- uGCGCCUgcugcggaGCCCGagacuGGUGCUGcuGGCCa -3' miRNA: 3'- uCGCGGAg-------CGGGU-----CCGCGACacUCGG- -5' |
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7253 | 3' | -62.7 | NC_001900.1 | + | 16958 | 0.67 | 0.256845 |
Target: 5'- cGCuGCUguagCGUUC-GGCGCUG-GAGCCg -3' miRNA: 3'- uCG-CGGa---GCGGGuCCGCGACaCUCGG- -5' |
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7253 | 3' | -62.7 | NC_001900.1 | + | 30009 | 0.67 | 0.269882 |
Target: 5'- --gGCCUCGaucgacuaCCAGGCGCaG-GAGCUu -3' miRNA: 3'- ucgCGGAGCg-------GGUCCGCGaCaCUCGG- -5' |
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7253 | 3' | -62.7 | NC_001900.1 | + | 39420 | 0.67 | 0.276597 |
Target: 5'- gAGCaGCCUUGaacuCCCGguggugcguGGCGCaccGUGGGCCg -3' miRNA: 3'- -UCG-CGGAGC----GGGU---------CCGCGa--CACUCGG- -5' |
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7253 | 3' | -62.7 | NC_001900.1 | + | 16906 | 0.66 | 0.283446 |
Target: 5'- -aCGaCUUGCCCAGGUGCUGaaccUGAGaCg -3' miRNA: 3'- ucGCgGAGCGGGUCCGCGAC----ACUCgG- -5' |
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7253 | 3' | -62.7 | NC_001900.1 | + | 347 | 0.66 | 0.290428 |
Target: 5'- gAGCGCC-CGaa-AGGCGCUcuuaGcGAGCCg -3' miRNA: 3'- -UCGCGGaGCgggUCCGCGA----CaCUCGG- -5' |
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7253 | 3' | -62.7 | NC_001900.1 | + | 4292 | 0.66 | 0.290428 |
Target: 5'- gGGCGgUUC-CCCAGaGCGUgggGAGCCc -3' miRNA: 3'- -UCGCgGAGcGGGUC-CGCGacaCUCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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