Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7253 | 3' | -62.7 | NC_001900.1 | + | 33786 | 0.66 | 0.31218 |
Target: 5'- cAGCuCCUgGCguuCCAGGCGCucuaccagacgUGcUGGGCCg -3' miRNA: 3'- -UCGcGGAgCG---GGUCCGCG-----------AC-ACUCGG- -5' |
|||||||
7253 | 3' | -62.7 | NC_001900.1 | + | 36580 | 0.71 | 0.145293 |
Target: 5'- cAGCGgacgagaUCGUCCAGGaGCUGUGGGUCu -3' miRNA: 3'- -UCGCgg-----AGCGGGUCCgCGACACUCGG- -5' |
|||||||
7253 | 3' | -62.7 | NC_001900.1 | + | 39420 | 0.67 | 0.276597 |
Target: 5'- gAGCaGCCUUGaacuCCCGguggugcguGGCGCaccGUGGGCCg -3' miRNA: 3'- -UCG-CGGAGC----GGGU---------CCGCGa--CACUCGG- -5' |
|||||||
7253 | 3' | -62.7 | NC_001900.1 | + | 41710 | 0.69 | 0.199263 |
Target: 5'- cAGCgGCCUUGCUCAGGUuCUcUGAGgCCa -3' miRNA: 3'- -UCG-CGGAGCGGGUCCGcGAcACUC-GG- -5' |
|||||||
7253 | 3' | -62.7 | NC_001900.1 | + | 48622 | 0.71 | 0.13771 |
Target: 5'- aGGCuGCUcguuaugUGCCCgguauGGGUGCUGUGAGCUg -3' miRNA: 3'- -UCG-CGGa------GCGGG-----UCCGCGACACUCGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home