miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7254 5' -60 NC_001900.1 + 337 1.08 0.000378
Target:  5'- aUCCGGCAACCGCCGGAUCUAGCGCCGc -3'
miRNA:   3'- -AGGCCGUUGGCGGCCUAGAUCGCGGC- -5'
7254 5' -60 NC_001900.1 + 402 0.73 0.149418
Target:  5'- aUCCGGCGGuuGCCGGAUCaauuccccGGCccuuguuggGCCGg -3'
miRNA:   3'- -AGGCCGUUggCGGCCUAGa-------UCG---------CGGC- -5'
7254 5' -60 NC_001900.1 + 1132 0.67 0.378472
Target:  5'- cCCGGCAAggaGCCGGggCaGGCGgCGu -3'
miRNA:   3'- aGGCCGUUgg-CGGCCuaGaUCGCgGC- -5'
7254 5' -60 NC_001900.1 + 1174 0.7 0.251599
Target:  5'- -gCGGCGguggaGCCGCCGGA---AGCgGCCGg -3'
miRNA:   3'- agGCCGU-----UGGCGGCCUagaUCG-CGGC- -5'
7254 5' -60 NC_001900.1 + 1423 0.66 0.470817
Target:  5'- -gCGGCGACCGCCaGcgCguugaaCGCCGc -3'
miRNA:   3'- agGCCGUUGGCGGcCuaGauc---GCGGC- -5'
7254 5' -60 NC_001900.1 + 1670 0.71 0.215992
Target:  5'- gUUCGGCAAgggccacgucCCGCCGG-UCUAcuccGCGCUGg -3'
miRNA:   3'- -AGGCCGUU----------GGCGGCCuAGAU----CGCGGC- -5'
7254 5' -60 NC_001900.1 + 4188 0.69 0.313879
Target:  5'- aCCGGCAACC-CCGGua--GGCGCa- -3'
miRNA:   3'- aGGCCGUUGGcGGCCuagaUCGCGgc -5'
7254 5' -60 NC_001900.1 + 5679 0.67 0.404891
Target:  5'- cUCaGCGACCGCCGcgaccucgaaacGGUCacGCGCCGg -3'
miRNA:   3'- aGGcCGUUGGCGGC------------CUAGauCGCGGC- -5'
7254 5' -60 NC_001900.1 + 6226 0.68 0.353236
Target:  5'- cCCGGCAuccugggcAUCGCCcuGAUCUGGgGCgGg -3'
miRNA:   3'- aGGCCGU--------UGGCGGc-CUAGAUCgCGgC- -5'
7254 5' -60 NC_001900.1 + 6605 0.7 0.2645
Target:  5'- gCCGGUuggauGCCGUugaGGAUCUGGCugGCCa -3'
miRNA:   3'- aGGCCGu----UGGCGg--CCUAGAUCG--CGGc -5'
7254 5' -60 NC_001900.1 + 8634 0.71 0.221612
Target:  5'- cUCUGGuCGGCUGCCGGGUCUccgacGGCcuGCUGu -3'
miRNA:   3'- -AGGCC-GUUGGCGGCCUAGA-----UCG--CGGC- -5'
7254 5' -60 NC_001900.1 + 9196 0.67 0.404891
Target:  5'- aUCCGGCGAUCGCCcgagacgagauGGUCUcGGCGuUCGa -3'
miRNA:   3'- -AGGCCGUUGGCGGc----------CUAGA-UCGC-GGC- -5'
7254 5' -60 NC_001900.1 + 9261 0.75 0.113907
Target:  5'- cUCgGGCGAUCGCCGGAUC-AGCGaucuccuccuguCCGg -3'
miRNA:   3'- -AGgCCGUUGGCGGCCUAGaUCGC------------GGC- -5'
7254 5' -60 NC_001900.1 + 10121 0.66 0.42129
Target:  5'- cUCGGCugccgagAACUGCUGGAUCUugccuucGGCGUCc -3'
miRNA:   3'- aGGCCG-------UUGGCGGCCUAGA-------UCGCGGc -5'
7254 5' -60 NC_001900.1 + 10599 0.71 0.205119
Target:  5'- cCUGG-GACCGUCGGGUC-GGCGUCGa -3'
miRNA:   3'- aGGCCgUUGGCGGCCUAGaUCGCGGC- -5'
7254 5' -60 NC_001900.1 + 13373 0.68 0.361514
Target:  5'- aUCCGGCGucggAUC-CCaGAUCUGGaCGCCa -3'
miRNA:   3'- -AGGCCGU----UGGcGGcCUAGAUC-GCGGc -5'
7254 5' -60 NC_001900.1 + 17052 0.67 0.395956
Target:  5'- gCCGaguGCGACCacaCCGGcUCcAGCGCCGa -3'
miRNA:   3'- aGGC---CGUUGGc--GGCCuAGaUCGCGGC- -5'
7254 5' -60 NC_001900.1 + 18856 0.66 0.423137
Target:  5'- gCCGGaAGCCGCCuucacgagcGGGUCaucgcccgcuGCGCCGa -3'
miRNA:   3'- aGGCCgUUGGCGG---------CCUAGau--------CGCGGC- -5'
7254 5' -60 NC_001900.1 + 19781 0.71 0.215992
Target:  5'- gUUCGcCAACCGCCGGcUCaAGaCGCCGg -3'
miRNA:   3'- -AGGCcGUUGGCGGCCuAGaUC-GCGGC- -5'
7254 5' -60 NC_001900.1 + 20997 0.67 0.387149
Target:  5'- cCCGGUgagccaggAGCCGCCGaaggcGGUCUcGGUGCCc -3'
miRNA:   3'- aGGCCG--------UUGGCGGC-----CUAGA-UCGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.