Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
7254 | 5' | -60 | NC_001900.1 | + | 337 | 1.08 | 0.000378 |
Target: 5'- aUCCGGCAACCGCCGGAUCUAGCGCCGc -3' miRNA: 3'- -AGGCCGUUGGCGGCCUAGAUCGCGGC- -5' |
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7254 | 5' | -60 | NC_001900.1 | + | 9261 | 0.75 | 0.113907 |
Target: 5'- cUCgGGCGAUCGCCGGAUC-AGCGaucuccuccuguCCGg -3' miRNA: 3'- -AGgCCGUUGGCGGCCUAGaUCGC------------GGC- -5' |
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7254 | 5' | -60 | NC_001900.1 | + | 29656 | 0.74 | 0.127052 |
Target: 5'- gCCGGCGGCUGCCGGuggaccgcUCUcggacguacucGGCGCUGa -3' miRNA: 3'- aGGCCGUUGGCGGCCu-------AGA-----------UCGCGGC- -5' |
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7254 | 5' | -60 | NC_001900.1 | + | 402 | 0.73 | 0.149418 |
Target: 5'- aUCCGGCGGuuGCCGGAUCaauuccccGGCccuuguuggGCCGg -3' miRNA: 3'- -AGGCCGUUggCGGCCUAGa-------UCG---------CGGC- -5' |
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7254 | 5' | -60 | NC_001900.1 | + | 10599 | 0.71 | 0.205119 |
Target: 5'- cCUGG-GACCGUCGGGUC-GGCGUCGa -3' miRNA: 3'- aGGCCgUUGGCGGCCUAGaUCGCGGC- -5' |
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7254 | 5' | -60 | NC_001900.1 | + | 1670 | 0.71 | 0.215992 |
Target: 5'- gUUCGGCAAgggccacgucCCGCCGG-UCUAcuccGCGCUGg -3' miRNA: 3'- -AGGCCGUU----------GGCGGCCuAGAU----CGCGGC- -5' |
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7254 | 5' | -60 | NC_001900.1 | + | 19781 | 0.71 | 0.215992 |
Target: 5'- gUUCGcCAACCGCCGGcUCaAGaCGCCGg -3' miRNA: 3'- -AGGCcGUUGGCGGCCuAGaUC-GCGGC- -5' |
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7254 | 5' | -60 | NC_001900.1 | + | 8634 | 0.71 | 0.221612 |
Target: 5'- cUCUGGuCGGCUGCCGGGUCUccgacGGCcuGCUGu -3' miRNA: 3'- -AGGCC-GUUGGCGGCCUAGA-----UCG--CGGC- -5' |
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7254 | 5' | -60 | NC_001900.1 | + | 29593 | 0.7 | 0.239221 |
Target: 5'- aCCGGCAGCCGCCGGcccAUC--GgGuuGa -3' miRNA: 3'- aGGCCGUUGGCGGCC---UAGauCgCggC- -5' |
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7254 | 5' | -60 | NC_001900.1 | + | 1174 | 0.7 | 0.251599 |
Target: 5'- -gCGGCGguggaGCCGCCGGA---AGCgGCCGg -3' miRNA: 3'- agGCCGU-----UGGCGGCCUagaUCG-CGGC- -5' |
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7254 | 5' | -60 | NC_001900.1 | + | 6605 | 0.7 | 0.2645 |
Target: 5'- gCCGGUuggauGCCGUugaGGAUCUGGCugGCCa -3' miRNA: 3'- aGGCCGu----UGGCGg--CCUAGAUCG--CGGc -5' |
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7254 | 5' | -60 | NC_001900.1 | + | 33324 | 0.7 | 0.270479 |
Target: 5'- -aCGGCAGCuacuccgCGCCGuGG-CUGGUGCCGa -3' miRNA: 3'- agGCCGUUG-------GCGGC-CUaGAUCGCGGC- -5' |
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7254 | 5' | -60 | NC_001900.1 | + | 4188 | 0.69 | 0.313879 |
Target: 5'- aCCGGCAACC-CCGGua--GGCGCa- -3' miRNA: 3'- aGGCCGUUGGcGGCCuagaUCGCGgc -5' |
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7254 | 5' | -60 | NC_001900.1 | + | 43823 | 0.68 | 0.329213 |
Target: 5'- aCCGGaa--CGCCGcuUCUGGCGUCGg -3' miRNA: 3'- aGGCCguugGCGGCcuAGAUCGCGGC- -5' |
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7254 | 5' | -60 | NC_001900.1 | + | 6226 | 0.68 | 0.353236 |
Target: 5'- cCCGGCAuccugggcAUCGCCcuGAUCUGGgGCgGg -3' miRNA: 3'- aGGCCGU--------UGGCGGc-CUAGAUCgCGgC- -5' |
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7254 | 5' | -60 | NC_001900.1 | + | 21598 | 0.68 | 0.361514 |
Target: 5'- aCgGGC-ACUGCUGGAUCggagaucGCGUCGg -3' miRNA: 3'- aGgCCGuUGGCGGCCUAGau-----CGCGGC- -5' |
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7254 | 5' | -60 | NC_001900.1 | + | 13373 | 0.68 | 0.361514 |
Target: 5'- aUCCGGCGucggAUC-CCaGAUCUGGaCGCCa -3' miRNA: 3'- -AGGCCGU----UGGcGGcCUAGAUC-GCGGc -5' |
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7254 | 5' | -60 | NC_001900.1 | + | 33055 | 0.67 | 0.369926 |
Target: 5'- gCUGGCcACCGCCGccgCUAcCGCCGc -3' miRNA: 3'- aGGCCGuUGGCGGCcuaGAUcGCGGC- -5' |
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7254 | 5' | -60 | NC_001900.1 | + | 33944 | 0.67 | 0.378472 |
Target: 5'- aCCGG-AugCGCCGGAUgaAGUaCCGg -3' miRNA: 3'- aGGCCgUugGCGGCCUAgaUCGcGGC- -5' |
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7254 | 5' | -60 | NC_001900.1 | + | 1132 | 0.67 | 0.378472 |
Target: 5'- cCCGGCAAggaGCCGGggCaGGCGgCGu -3' miRNA: 3'- aGGCCGUUgg-CGGCCuaGaUCGCgGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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