miRNA display CGI


Results 21 - 33 of 33 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7254 5' -60 NC_001900.1 + 20997 0.67 0.387149
Target:  5'- cCCGGUgagccaggAGCCGCCGaaggcGGUCUcGGUGCCc -3'
miRNA:   3'- aGGCCG--------UUGGCGGC-----CUAGA-UCGCGGc -5'
7254 5' -60 NC_001900.1 + 17052 0.67 0.395956
Target:  5'- gCCGaguGCGACCacaCCGGcUCcAGCGCCGa -3'
miRNA:   3'- aGGC---CGUUGGc--GGCCuAGaUCGCGGC- -5'
7254 5' -60 NC_001900.1 + 9196 0.67 0.404891
Target:  5'- aUCCGGCGAUCGCCcgagacgagauGGUCUcGGCGuUCGa -3'
miRNA:   3'- -AGGCCGUUGGCGGc----------CUAGA-UCGC-GGC- -5'
7254 5' -60 NC_001900.1 + 5679 0.67 0.404891
Target:  5'- cUCaGCGACCGCCGcgaccucgaaacGGUCacGCGCCGg -3'
miRNA:   3'- aGGcCGUUGGCGGC------------CUAGauCGCGGC- -5'
7254 5' -60 NC_001900.1 + 24067 0.67 0.413952
Target:  5'- cCCGGCAgggACCGUCGcGcaGUaCUGGCGCgGc -3'
miRNA:   3'- aGGCCGU---UGGCGGC-C--UA-GAUCGCGgC- -5'
7254 5' -60 NC_001900.1 + 10121 0.66 0.42129
Target:  5'- cUCGGCugccgagAACUGCUGGAUCUugccuucGGCGUCc -3'
miRNA:   3'- aGGCCG-------UUGGCGGCCUAGA-------UCGCGGc -5'
7254 5' -60 NC_001900.1 + 18856 0.66 0.423137
Target:  5'- gCCGGaAGCCGCCuucacgagcGGGUCaucgcccgcuGCGCCGa -3'
miRNA:   3'- aGGCCgUUGGCGG---------CCUAGau--------CGCGGC- -5'
7254 5' -60 NC_001900.1 + 23585 0.66 0.451407
Target:  5'- gCCuGCAGCCucaCCGGGgaUGGUGCCGa -3'
miRNA:   3'- aGGcCGUUGGc--GGCCUagAUCGCGGC- -5'
7254 5' -60 NC_001900.1 + 1423 0.66 0.470817
Target:  5'- -gCGGCGACCGCCaGcgCguugaaCGCCGc -3'
miRNA:   3'- agGCCGUUGGCGGcCuaGauc---GCGGC- -5'
7254 5' -60 NC_001900.1 + 30981 0.66 0.470817
Target:  5'- cCUGGguGCUGCCcaucgaGGAUCUGGagauGCUGg -3'
miRNA:   3'- aGGCCguUGGCGG------CCUAGAUCg---CGGC- -5'
7254 5' -60 NC_001900.1 + 42863 0.66 0.470817
Target:  5'- -aCGGCAGauccaCGUCGGG-CUGGaCGCCu -3'
miRNA:   3'- agGCCGUUg----GCGGCCUaGAUC-GCGGc -5'
7254 5' -60 NC_001900.1 + 23916 0.66 0.470817
Target:  5'- cCUGGCcuucccAGCCccagcGCCGGAagCcAGCGCCGa -3'
miRNA:   3'- aGGCCG------UUGG-----CGGCCUa-GaUCGCGGC- -5'
7254 5' -60 NC_001900.1 + 23346 0.66 0.470817
Target:  5'- aCCGGCGGCgGCuaCGGAUCgGGCagagGCUa -3'
miRNA:   3'- aGGCCGUUGgCG--GCCUAGaUCG----CGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.