miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7255 5' -56.1 NC_001900.1 + 5745 0.71 0.384514
Target:  5'- gGUCGCGGCgGUCGCuGAGUGCGUugaUGUCu -3'
miRNA:   3'- aCGGCGCUG-UAGCG-CUUAUGCG---GCGG- -5'
7255 5' -56.1 NC_001900.1 + 25738 0.7 0.411835
Target:  5'- gUGCCGCcucACGUCGCGGcgAUGauCCGCg -3'
miRNA:   3'- -ACGGCGc--UGUAGCGCUuaUGC--GGCGg -5'
7255 5' -56.1 NC_001900.1 + 37023 0.7 0.440325
Target:  5'- -aCCGCuGCAUCGCGuuGUACGCggugucaGCCg -3'
miRNA:   3'- acGGCGcUGUAGCGCu-UAUGCGg------CGG- -5'
7255 5' -56.1 NC_001900.1 + 40319 0.7 0.430703
Target:  5'- cGCUGCGGC--CGUG-GUugGCCGCg -3'
miRNA:   3'- aCGGCGCUGuaGCGCuUAugCGGCGg -5'
7255 5' -56.1 NC_001900.1 + 13644 0.7 0.393487
Target:  5'- cGCCaGCGACGUUcaGCGGgcuccgaucaaGUAC-CCGCCg -3'
miRNA:   3'- aCGG-CGCUGUAG--CGCU-----------UAUGcGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 24150 0.7 0.390781
Target:  5'- cGCCGCGcCAguacugCGCGAcggucccugccgggAUA-GCCGCCu -3'
miRNA:   3'- aCGGCGCuGUa-----GCGCU--------------UAUgCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 1879 0.7 0.411835
Target:  5'- cUGUCGCucGACAUCaGCGAGU-CGCCGa- -3'
miRNA:   3'- -ACGGCG--CUGUAG-CGCUUAuGCGGCgg -5'
7255 5' -56.1 NC_001900.1 + 25864 0.7 0.421206
Target:  5'- cGCCGCaagGACAUCGUGGAUgACGgCGagaCg -3'
miRNA:   3'- aCGGCG---CUGUAGCGCUUA-UGCgGCg--G- -5'
7255 5' -56.1 NC_001900.1 + 1424 0.7 0.440325
Target:  5'- gGCgGCGACcgccagCGCGuugaACGCCGCa -3'
miRNA:   3'- aCGgCGCUGua----GCGCuua-UGCGGCGg -5'
7255 5' -56.1 NC_001900.1 + 34882 0.69 0.45993
Target:  5'- gUGCCGcCGaACGUCuucagcuuGCGAcc-CGCCGCCc -3'
miRNA:   3'- -ACGGC-GC-UGUAG--------CGCUuauGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 48517 0.69 0.490175
Target:  5'- gUG-UGUGACGU-GCGGuUACGCCGCUg -3'
miRNA:   3'- -ACgGCGCUGUAgCGCUuAUGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 10453 0.69 0.45993
Target:  5'- cGCCGag----CGCGAggagAUGCGCCGCUg -3'
miRNA:   3'- aCGGCgcuguaGCGCU----UAUGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 8715 0.69 0.490175
Target:  5'- -cCCGCGAguUCGUGG--ACGCUGCa -3'
miRNA:   3'- acGGCGCUguAGCGCUuaUGCGGCGg -5'
7255 5' -56.1 NC_001900.1 + 5688 0.69 0.479987
Target:  5'- cGCCGCGACcUCGaaaCGGucACG-CGCCg -3'
miRNA:   3'- aCGGCGCUGuAGC---GCUuaUGCgGCGG- -5'
7255 5' -56.1 NC_001900.1 + 35747 0.69 0.479987
Target:  5'- gGCCGUaGCcaGggGUGAAcACGCCGCCg -3'
miRNA:   3'- aCGGCGcUG--UagCGCUUaUGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 7819 0.69 0.45993
Target:  5'- aGCCGCGccccGCAgCGUGGAUcaccguCGCgGCCg -3'
miRNA:   3'- aCGGCGC----UGUaGCGCUUAu-----GCGgCGG- -5'
7255 5' -56.1 NC_001900.1 + 24607 0.69 0.490175
Target:  5'- gUGCCGgGAUGUUGUaGGUguacGCGCCGaCCg -3'
miRNA:   3'- -ACGGCgCUGUAGCGcUUA----UGCGGC-GG- -5'
7255 5' -56.1 NC_001900.1 + 38435 0.69 0.490175
Target:  5'- gGCUgacgGCGACGagcccgguauggaguUCGCGAAgucgguggccaagACGCUGCCg -3'
miRNA:   3'- aCGG----CGCUGU---------------AGCGCUUa------------UGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 8786 0.68 0.542496
Target:  5'- cUGCaGCGuccACGaacUCGCGGGgcacuuCGCCGCCg -3'
miRNA:   3'- -ACGgCGC---UGU---AGCGCUUau----GCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 21563 0.68 0.542496
Target:  5'- gGCUGCGAUGgcCGCGA--ACGCCGa- -3'
miRNA:   3'- aCGGCGCUGUa-GCGCUuaUGCGGCgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.