miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7255 5' -56.1 NC_001900.1 + 8715 0.69 0.490175
Target:  5'- -cCCGCGAguUCGUGG--ACGCUGCa -3'
miRNA:   3'- acGGCGCUguAGCGCUuaUGCGGCGg -5'
7255 5' -56.1 NC_001900.1 + 8786 0.68 0.542496
Target:  5'- cUGCaGCGuccACGaacUCGCGGGgcacuuCGCCGCCg -3'
miRNA:   3'- -ACGgCGC---UGU---AGCGCUUau----GCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 10346 0.73 0.280658
Target:  5'- aGCacccCGACGUacgcCGCGAAggcugACGCCGCCa -3'
miRNA:   3'- aCGgc--GCUGUA----GCGCUUa----UGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 10453 0.69 0.45993
Target:  5'- cGCCGag----CGCGAggagAUGCGCCGCUg -3'
miRNA:   3'- aCGGCgcuguaGCGCU----UAUGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 10641 0.66 0.629376
Target:  5'- gGCCGUGAuCAcugcggggcUCGcCGggUACGUccagcgguuCGCCa -3'
miRNA:   3'- aCGGCGCU-GU---------AGC-GCuuAUGCG---------GCGG- -5'
7255 5' -56.1 NC_001900.1 + 11502 0.74 0.228581
Target:  5'- aGUCG-GACAUUGCGAAcuCGCCGCg -3'
miRNA:   3'- aCGGCgCUGUAGCGCUUauGCGGCGg -5'
7255 5' -56.1 NC_001900.1 + 12525 0.77 0.165963
Target:  5'- cGCCGuCGAacgcCAUCGCGAAgGCGgUCGCCa -3'
miRNA:   3'- aCGGC-GCU----GUAGCGCUUaUGC-GGCGG- -5'
7255 5' -56.1 NC_001900.1 + 13282 0.67 0.607462
Target:  5'- cGCUGaCGACGUUGUGAcguuGUGgGCCaaggaGCCu -3'
miRNA:   3'- aCGGC-GCUGUAGCGCU----UAUgCGG-----CGG- -5'
7255 5' -56.1 NC_001900.1 + 13644 0.7 0.393487
Target:  5'- cGCCaGCGACGUUcaGCGGgcuccgaucaaGUAC-CCGCCg -3'
miRNA:   3'- aCGG-CGCUGUAG--CGCU-----------UAUGcGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 13719 0.67 0.607462
Target:  5'- cGCCGCGAUGU-GCGAccACGaaGCg -3'
miRNA:   3'- aCGGCGCUGUAgCGCUuaUGCggCGg -5'
7255 5' -56.1 NC_001900.1 + 13783 0.68 0.557491
Target:  5'- gGUCGC-ACAUCGCGGcgucgacuuggucagGUGUGaCCGCCa -3'
miRNA:   3'- aCGGCGcUGUAGCGCU---------------UAUGC-GGCGG- -5'
7255 5' -56.1 NC_001900.1 + 14286 0.71 0.357574
Target:  5'- gGCCGCGACcuuguUCGCGuucGCGUagaccuuCGCCa -3'
miRNA:   3'- aCGGCGCUGu----AGCGCuuaUGCG-------GCGG- -5'
7255 5' -56.1 NC_001900.1 + 15007 0.71 0.36698
Target:  5'- cUGCUGCGG--UCGgGuauguGUACGUCGCCg -3'
miRNA:   3'- -ACGGCGCUguAGCgCu----UAUGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 15246 0.66 0.673154
Target:  5'- aGCCcuUGACcUCG-GAAU-CGCCGCCc -3'
miRNA:   3'- aCGGc-GCUGuAGCgCUUAuGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 15432 0.78 0.140802
Target:  5'- cGUCGCGACGaCGCGAucgaGCUGCCg -3'
miRNA:   3'- aCGGCGCUGUaGCGCUuaugCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 16439 0.67 0.607462
Target:  5'- cGCCGCGAUGguaguggcCGCGAAgaagGCUGCg -3'
miRNA:   3'- aCGGCGCUGUa-------GCGCUUaug-CGGCGg -5'
7255 5' -56.1 NC_001900.1 + 16890 0.67 0.607462
Target:  5'- cGUCGgGAuCGUCGCcaucgccGCGCCGCUu -3'
miRNA:   3'- aCGGCgCU-GUAGCGcuua---UGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 19549 0.67 0.597623
Target:  5'- cGCCGUGGCcgUGgGAGgaacugcccaaggagACGCUGCg -3'
miRNA:   3'- aCGGCGCUGuaGCgCUUa--------------UGCGGCGg -5'
7255 5' -56.1 NC_001900.1 + 20164 0.67 0.607462
Target:  5'- cUG-CGCGGCcucGUCGCGggUgaGCGaCUGCUg -3'
miRNA:   3'- -ACgGCGCUG---UAGCGCuuA--UGC-GGCGG- -5'
7255 5' -56.1 NC_001900.1 + 21082 0.66 0.6513
Target:  5'- cGCCGgGgaACGUguagucaccCGUGAAUACGUCGaCCc -3'
miRNA:   3'- aCGGCgC--UGUA---------GCGCUUAUGCGGC-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.