miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7255 5' -56.1 NC_001900.1 + 554 1.13 0.000427
Target:  5'- aUGCCGCGACAUCGCGAAUACGCCGCCg -3'
miRNA:   3'- -ACGGCGCUGUAGCGCUUAUGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 613 0.71 0.350004
Target:  5'- aUGUCGCGGCAUguuccaggcCGCGAGgUugGCCGg- -3'
miRNA:   3'- -ACGGCGCUGUA---------GCGCUU-AugCGGCgg -5'
7255 5' -56.1 NC_001900.1 + 1142 0.67 0.606367
Target:  5'- aGCCGgGGCAggcggCGUGggUggacuuggaggcgGCgguggaGCCGCCg -3'
miRNA:   3'- aCGGCgCUGUa----GCGCuuA-------------UG------CGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 1342 0.68 0.500463
Target:  5'- aGCgUGCGGCGUUcaacgcgcugGCGGu--CGCCGCCc -3'
miRNA:   3'- aCG-GCGCUGUAG----------CGCUuauGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 1424 0.7 0.440325
Target:  5'- gGCgGCGACcgccagCGCGuugaACGCCGCa -3'
miRNA:   3'- aCGgCGCUGua----GCGCuua-UGCGGCGg -5'
7255 5' -56.1 NC_001900.1 + 1879 0.7 0.411835
Target:  5'- cUGUCGCucGACAUCaGCGAGU-CGCCGa- -3'
miRNA:   3'- -ACGGCG--CUGUAG-CGCUUAuGCGGCgg -5'
7255 5' -56.1 NC_001900.1 + 3455 0.67 0.563955
Target:  5'- gUGCaGCG-CGUUGUGcu--CGCCGCCg -3'
miRNA:   3'- -ACGgCGCuGUAGCGCuuauGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 3872 0.68 0.521315
Target:  5'- cGCCGuCGAgGUcacgccgacCGCGAAggugacgACGCCGaCCu -3'
miRNA:   3'- aCGGC-GCUgUA---------GCGCUUa------UGCGGC-GG- -5'
7255 5' -56.1 NC_001900.1 + 4243 0.67 0.581281
Target:  5'- uUGCCGguaGACGaCGCGAGUuguuuggggucacCGCCgGCCg -3'
miRNA:   3'- -ACGGCg--CUGUaGCGCUUAu------------GCGG-CGG- -5'
7255 5' -56.1 NC_001900.1 + 5238 0.66 0.672064
Target:  5'- aGUCGUGGaagaGCGGucguuccaggcgcGUGCGCCGUCg -3'
miRNA:   3'- aCGGCGCUguagCGCU-------------UAUGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 5688 0.69 0.479987
Target:  5'- cGCCGCGACcUCGaaaCGGucACG-CGCCg -3'
miRNA:   3'- aCGGCGCUGuAGC---GCUuaUGCgGCGG- -5'
7255 5' -56.1 NC_001900.1 + 5745 0.71 0.384514
Target:  5'- gGUCGCGGCgGUCGCuGAGUGCGUugaUGUCu -3'
miRNA:   3'- aCGGCGCUG-UAGCG-CUUAUGCG---GCGG- -5'
7255 5' -56.1 NC_001900.1 + 5915 0.66 0.629376
Target:  5'- cGCCcCGugGaucUCGCGGAUGaaCCGCUg -3'
miRNA:   3'- aCGGcGCugU---AGCGCUUAUgcGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 6027 0.72 0.317755
Target:  5'- -uCCGCGAgCuggaGCGAGUuguccGCGCCGCCa -3'
miRNA:   3'- acGGCGCU-Guag-CGCUUA-----UGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 6276 0.76 0.17521
Target:  5'- aGCCGCGaACAUCgGCGAcauCGUCGCUg -3'
miRNA:   3'- aCGGCGC-UGUAG-CGCUuauGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 6355 0.72 0.324812
Target:  5'- cGCCaGCGACGaugucgccgauguUCGCGGcUGCGcCCGCg -3'
miRNA:   3'- aCGG-CGCUGU-------------AGCGCUuAUGC-GGCGg -5'
7255 5' -56.1 NC_001900.1 + 6393 0.77 0.148775
Target:  5'- gGCCGUGGCcggUGCGGcUGCGCCGaCCa -3'
miRNA:   3'- aCGGCGCUGua-GCGCUuAUGCGGC-GG- -5'
7255 5' -56.1 NC_001900.1 + 6785 0.66 0.6513
Target:  5'- gGCCGCaGCgggguaGUUGCcGAUGgGCUGCCa -3'
miRNA:   3'- aCGGCGcUG------UAGCGcUUAUgCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 7819 0.69 0.45993
Target:  5'- aGCCGCGccccGCAgCGUGGAUcaccguCGCgGCCg -3'
miRNA:   3'- aCGGCGC----UGUaGCGCUUAu-----GCGgCGG- -5'
7255 5' -56.1 NC_001900.1 + 7901 0.71 0.384514
Target:  5'- gGCCGCGACG--GUGAuccACGCUGCg -3'
miRNA:   3'- aCGGCGCUGUagCGCUua-UGCGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.