miRNA display CGI


Results 1 - 20 of 90 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7255 5' -56.1 NC_001900.1 + 554 1.13 0.000427
Target:  5'- aUGCCGCGACAUCGCGAAUACGCCGCCg -3'
miRNA:   3'- -ACGGCGCUGUAGCGCUUAUGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 40160 0.83 0.060166
Target:  5'- cUGCCGCGACucugUGCGggUgacGCGCCGCg -3'
miRNA:   3'- -ACGGCGCUGua--GCGCuuA---UGCGGCGg -5'
7255 5' -56.1 NC_001900.1 + 15432 0.78 0.140802
Target:  5'- cGUCGCGACGaCGCGAucgaGCUGCCg -3'
miRNA:   3'- aCGGCGCUGUaGCGCUuaugCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 6393 0.77 0.148775
Target:  5'- gGCCGUGGCcggUGCGGcUGCGCCGaCCa -3'
miRNA:   3'- aCGGCGCUGua-GCGCUuAUGCGGC-GG- -5'
7255 5' -56.1 NC_001900.1 + 46350 0.77 0.157156
Target:  5'- uUGCCGCGccaguCGUCGCGAAgccucugGCCGCUg -3'
miRNA:   3'- -ACGGCGCu----GUAGCGCUUaug----CGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 12525 0.77 0.165963
Target:  5'- cGCCGuCGAacgcCAUCGCGAAgGCGgUCGCCa -3'
miRNA:   3'- aCGGC-GCU----GUAGCGCUUaUGC-GGCGG- -5'
7255 5' -56.1 NC_001900.1 + 27206 0.77 0.165963
Target:  5'- cGCCGCGAucacCAUCGCGAuga-GCCGUg -3'
miRNA:   3'- aCGGCGCU----GUAGCGCUuaugCGGCGg -5'
7255 5' -56.1 NC_001900.1 + 6276 0.76 0.17521
Target:  5'- aGCCGCGaACAUCgGCGAcauCGUCGCUg -3'
miRNA:   3'- aCGGCGC-UGUAG-CGCUuauGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 22657 0.75 0.211263
Target:  5'- cGCCGCcg-AUCuCGAAUGCGCCGUCa -3'
miRNA:   3'- aCGGCGcugUAGcGCUUAUGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 11502 0.74 0.228581
Target:  5'- aGUCG-GACAUUGCGAAcuCGCCGCg -3'
miRNA:   3'- aCGGCgCUGUAGCGCUUauGCGGCGg -5'
7255 5' -56.1 NC_001900.1 + 25052 0.74 0.240783
Target:  5'- -aCUGgGAcCGUUGCGGcUGCGCCGCCg -3'
miRNA:   3'- acGGCgCU-GUAGCGCUuAUGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 10346 0.73 0.280658
Target:  5'- aGCacccCGACGUacgcCGCGAAggcugACGCCGCCa -3'
miRNA:   3'- aCGgc--GCUGUA----GCGCUUa----UGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 6027 0.72 0.317755
Target:  5'- -uCCGCGAgCuggaGCGAGUuguccGCGCCGCCa -3'
miRNA:   3'- acGGCGCU-Guag-CGCUUA-----UGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 6355 0.72 0.324812
Target:  5'- cGCCaGCGACGaugucgccgauguUCGCGGcUGCGcCCGCg -3'
miRNA:   3'- aCGG-CGCUGU-------------AGCGCUuAUGC-GGCGg -5'
7255 5' -56.1 NC_001900.1 + 40746 0.72 0.325603
Target:  5'- aUGUCGUcaGCGcCGCGA--GCGCCGCCg -3'
miRNA:   3'- -ACGGCGc-UGUaGCGCUuaUGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 33706 0.72 0.341728
Target:  5'- cGCCuaCGAgGgCGUGGAUGuCGCCGCCg -3'
miRNA:   3'- aCGGc-GCUgUaGCGCUUAU-GCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 613 0.71 0.350004
Target:  5'- aUGUCGCGGCAUguuccaggcCGCGAGgUugGCCGg- -3'
miRNA:   3'- -ACGGCGCUGUA---------GCGCUU-AugCGGCgg -5'
7255 5' -56.1 NC_001900.1 + 14286 0.71 0.357574
Target:  5'- gGCCGCGACcuuguUCGCGuucGCGUagaccuuCGCCa -3'
miRNA:   3'- aCGGCGCUGu----AGCGCuuaUGCG-------GCGG- -5'
7255 5' -56.1 NC_001900.1 + 15007 0.71 0.36698
Target:  5'- cUGCUGCGG--UCGgGuauguGUACGUCGCCg -3'
miRNA:   3'- -ACGGCGCUguAGCgCu----UAUGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 5745 0.71 0.384514
Target:  5'- gGUCGCGGCgGUCGCuGAGUGCGUugaUGUCu -3'
miRNA:   3'- aCGGCGCUG-UAGCG-CUUAUGCG---GCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.