miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7255 5' -56.1 NC_001900.1 + 554 1.13 0.000427
Target:  5'- aUGCCGCGACAUCGCGAAUACGCCGCCg -3'
miRNA:   3'- -ACGGCGCUGUAGCGCUUAUGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 48517 0.69 0.490175
Target:  5'- gUG-UGUGACGU-GCGGuUACGCCGCUg -3'
miRNA:   3'- -ACgGCGCUGUAgCGCUuAUGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 1342 0.68 0.500463
Target:  5'- aGCgUGCGGCGUUcaacgcgcugGCGGu--CGCCGCCc -3'
miRNA:   3'- aCG-GCGCUGUAG----------CGCUuauGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 42079 0.66 0.673154
Target:  5'- gGCCgGUGACGUgGUGGAgcccgaucACGCaagaGCCa -3'
miRNA:   3'- aCGG-CGCUGUAgCGCUUa-------UGCGg---CGG- -5'
7255 5' -56.1 NC_001900.1 + 6276 0.76 0.17521
Target:  5'- aGCCGCGaACAUCgGCGAcauCGUCGCUg -3'
miRNA:   3'- aCGGCGC-UGUAG-CGCUuauGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 10346 0.73 0.280658
Target:  5'- aGCacccCGACGUacgcCGCGAAggcugACGCCGCCa -3'
miRNA:   3'- aCGgc--GCUGUA----GCGCUUa----UGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 40746 0.72 0.325603
Target:  5'- aUGUCGUcaGCGcCGCGA--GCGCCGCCg -3'
miRNA:   3'- -ACGGCGc-UGUaGCGCUuaUGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 15007 0.71 0.36698
Target:  5'- cUGCUGCGG--UCGgGuauguGUACGUCGCCg -3'
miRNA:   3'- -ACGGCGCUguAGCgCu----UAUGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 37023 0.7 0.440325
Target:  5'- -aCCGCuGCAUCGCGuuGUACGCggugucaGCCg -3'
miRNA:   3'- acGGCGcUGUAGCGCu-UAUGCGg------CGG- -5'
7255 5' -56.1 NC_001900.1 + 35747 0.69 0.479987
Target:  5'- gGCCGUaGCcaGggGUGAAcACGCCGCCg -3'
miRNA:   3'- aCGGCGcUG--UagCGCUUaUGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 10453 0.69 0.45993
Target:  5'- cGCCGag----CGCGAggagAUGCGCCGCUg -3'
miRNA:   3'- aCGGCgcuguaGCGCU----UAUGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 40319 0.7 0.430703
Target:  5'- cGCUGCGGC--CGUG-GUugGCCGCg -3'
miRNA:   3'- aCGGCGCUGuaGCGCuUAugCGGCGg -5'
7255 5' -56.1 NC_001900.1 + 40160 0.83 0.060166
Target:  5'- cUGCCGCGACucugUGCGggUgacGCGCCGCg -3'
miRNA:   3'- -ACGGCGCUGua--GCGCuuA---UGCGGCGg -5'
7255 5' -56.1 NC_001900.1 + 34882 0.69 0.45993
Target:  5'- gUGCCGcCGaACGUCuucagcuuGCGAcc-CGCCGCCc -3'
miRNA:   3'- -ACGGC-GC-UGUAG--------CGCUuauGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 15432 0.78 0.140802
Target:  5'- cGUCGCGACGaCGCGAucgaGCUGCCg -3'
miRNA:   3'- aCGGCGCUGUaGCGCUuaugCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 13644 0.7 0.393487
Target:  5'- cGCCaGCGACGUUcaGCGGgcuccgaucaaGUAC-CCGCCg -3'
miRNA:   3'- aCGG-CGCUGUAG--CGCU-----------UAUGcGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 5688 0.69 0.479987
Target:  5'- cGCCGCGACcUCGaaaCGGucACG-CGCCg -3'
miRNA:   3'- aCGGCGCUGuAGC---GCUuaUGCgGCGG- -5'
7255 5' -56.1 NC_001900.1 + 8715 0.69 0.490175
Target:  5'- -cCCGCGAguUCGUGG--ACGCUGCa -3'
miRNA:   3'- acGGCGCUguAGCGCUuaUGCGGCGg -5'
7255 5' -56.1 NC_001900.1 + 46350 0.77 0.157156
Target:  5'- uUGCCGCGccaguCGUCGCGAAgccucugGCCGCUg -3'
miRNA:   3'- -ACGGCGCu----GUAGCGCUUaug----CGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 6027 0.72 0.317755
Target:  5'- -uCCGCGAgCuggaGCGAGUuguccGCGCCGCCa -3'
miRNA:   3'- acGGCGCU-Guag-CGCUUA-----UGCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.