miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7255 5' -56.1 NC_001900.1 + 33829 0.68 0.497366
Target:  5'- cGCCGagGACAUCGUGgAGUcagccaacgagcugACGCUGCa -3'
miRNA:   3'- aCGGCg-CUGUAGCGC-UUA--------------UGCGGCGg -5'
7255 5' -56.1 NC_001900.1 + 45735 0.68 0.553194
Target:  5'- gGCCGUGA----GCGuGUGCGCCGUg -3'
miRNA:   3'- aCGGCGCUguagCGCuUAUGCGGCGg -5'
7255 5' -56.1 NC_001900.1 + 8786 0.68 0.542496
Target:  5'- cUGCaGCGuccACGaacUCGCGGGgcacuuCGCCGCCg -3'
miRNA:   3'- -ACGgCGC---UGU---AGCGCUUau----GCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 21563 0.68 0.542496
Target:  5'- gGCUGCGAUGgcCGCGA--ACGCCGa- -3'
miRNA:   3'- aCGGCGCUGUa-GCGCUuaUGCGGCgg -5'
7255 5' -56.1 NC_001900.1 + 33309 0.68 0.542496
Target:  5'- cGCCGUGGCuggUGcCGAAgUACGCCaGCg -3'
miRNA:   3'- aCGGCGCUGua-GC-GCUU-AUGCGG-CGg -5'
7255 5' -56.1 NC_001900.1 + 27563 0.68 0.542496
Target:  5'- cGCCGCuACAUCGCcGAcgGCcggcucaagGCCGUg -3'
miRNA:   3'- aCGGCGcUGUAGCG-CUuaUG---------CGGCGg -5'
7255 5' -56.1 NC_001900.1 + 46559 0.68 0.54143
Target:  5'- cGCCGaaggguucaucauCGACG--GCGAuUACGCCGCg -3'
miRNA:   3'- aCGGC-------------GCUGUagCGCUuAUGCGGCGg -5'
7255 5' -56.1 NC_001900.1 + 3872 0.68 0.521315
Target:  5'- cGCCGuCGAgGUcacgccgacCGCGAAggugacgACGCCGaCCu -3'
miRNA:   3'- aCGGC-GCUgUA---------GCGCUUa------UGCGGC-GG- -5'
7255 5' -56.1 NC_001900.1 + 48982 0.68 0.521315
Target:  5'- -cCUGCGACGaUGCGAAUGC-CgGCCu -3'
miRNA:   3'- acGGCGCUGUaGCGCUUAUGcGgCGG- -5'
7255 5' -56.1 NC_001900.1 + 13783 0.68 0.557491
Target:  5'- gGUCGC-ACAUCGCGGcgucgacuuggucagGUGUGaCCGCCa -3'
miRNA:   3'- aCGGCGcUGUAGCGCU---------------UAUGC-GGCGG- -5'
7255 5' -56.1 NC_001900.1 + 3455 0.67 0.563955
Target:  5'- gUGCaGCG-CGUUGUGcu--CGCCGCCg -3'
miRNA:   3'- -ACGgCGCuGUAGCGCuuauGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 4243 0.67 0.581281
Target:  5'- uUGCCGguaGACGaCGCGAGUuguuuggggucacCGCCgGCCg -3'
miRNA:   3'- -ACGGCg--CUGUaGCGCUUAu------------GCGG-CGG- -5'
7255 5' -56.1 NC_001900.1 + 24852 0.66 0.673154
Target:  5'- gGCUGUGGUGUCGCccccuuUGCCGCCc -3'
miRNA:   3'- aCGGCGCUGUAGCGcuuau-GCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 5238 0.66 0.672064
Target:  5'- aGUCGUGGaagaGCGGucguuccaggcgcGUGCGCCGUCg -3'
miRNA:   3'- aCGGCGCUguagCGCU-------------UAUGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 24037 0.66 0.662241
Target:  5'- aUGCCGaCGACGcCGguuuCGAGguggACcgaGCCGCCa -3'
miRNA:   3'- -ACGGC-GCUGUaGC----GCUUa---UG---CGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 6785 0.66 0.6513
Target:  5'- gGCCGCaGCgggguaGUUGCcGAUGgGCUGCCa -3'
miRNA:   3'- aCGGCGcUG------UAGCGcUUAUgCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 21082 0.66 0.6513
Target:  5'- cGCCGgGgaACGUguagucaccCGUGAAUACGUCGaCCc -3'
miRNA:   3'- aCGGCgC--UGUA---------GCGCUUAUGCGGC-GG- -5'
7255 5' -56.1 NC_001900.1 + 35168 0.66 0.640342
Target:  5'- cGUCGCGACGaggaccaCGaCGAcUACGCUGaCCu -3'
miRNA:   3'- aCGGCGCUGUa------GC-GCUuAUGCGGC-GG- -5'
7255 5' -56.1 NC_001900.1 + 5915 0.66 0.629376
Target:  5'- cGCCcCGugGaucUCGCGGAUGaaCCGCUg -3'
miRNA:   3'- aCGGcGCugU---AGCGCUUAUgcGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 41848 0.67 0.607462
Target:  5'- -aCCGCaGcCAUCGCccu--CGCCGCCg -3'
miRNA:   3'- acGGCG-CuGUAGCGcuuauGCGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.