Results 41 - 60 of 90 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
7255 | 5' | -56.1 | NC_001900.1 | + | 21563 | 0.68 | 0.542496 |
Target: 5'- gGCUGCGAUGgcCGCGA--ACGCCGa- -3' miRNA: 3'- aCGGCGCUGUa-GCGCUuaUGCGGCgg -5' |
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7255 | 5' | -56.1 | NC_001900.1 | + | 8786 | 0.68 | 0.542496 |
Target: 5'- cUGCaGCGuccACGaacUCGCGGGgcacuuCGCCGCCg -3' miRNA: 3'- -ACGgCGC---UGU---AGCGCUUau----GCGGCGG- -5' |
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7255 | 5' | -56.1 | NC_001900.1 | + | 27563 | 0.68 | 0.542496 |
Target: 5'- cGCCGCuACAUCGCcGAcgGCcggcucaagGCCGUg -3' miRNA: 3'- aCGGCGcUGUAGCG-CUuaUG---------CGGCGg -5' |
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7255 | 5' | -56.1 | NC_001900.1 | + | 33309 | 0.68 | 0.542496 |
Target: 5'- cGCCGUGGCuggUGcCGAAgUACGCCaGCg -3' miRNA: 3'- aCGGCGCUGua-GC-GCUU-AUGCGG-CGg -5' |
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7255 | 5' | -56.1 | NC_001900.1 | + | 46559 | 0.68 | 0.54143 |
Target: 5'- cGCCGaaggguucaucauCGACG--GCGAuUACGCCGCg -3' miRNA: 3'- aCGGC-------------GCUGUagCGCUuAUGCGGCGg -5' |
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7255 | 5' | -56.1 | NC_001900.1 | + | 36705 | 0.68 | 0.531867 |
Target: 5'- cGCCGCGACcgUGCGuucuugugcaGGUACGgCaGCUu -3' miRNA: 3'- aCGGCGCUGuaGCGC----------UUAUGCgG-CGG- -5' |
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7255 | 5' | -56.1 | NC_001900.1 | + | 25754 | 0.68 | 0.526581 |
Target: 5'- gGCCGCGccccggcGCA-CGCGGAgcuucaucgucuCGCCGUCa -3' miRNA: 3'- aCGGCGC-------UGUaGCGCUUau----------GCGGCGG- -5' |
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7255 | 5' | -56.1 | NC_001900.1 | + | 32683 | 0.68 | 0.521315 |
Target: 5'- gGCCaGCGAacucCGCGAGUuCGuCUGCCg -3' miRNA: 3'- aCGG-CGCUgua-GCGCUUAuGC-GGCGG- -5' |
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7255 | 5' | -56.1 | NC_001900.1 | + | 48982 | 0.68 | 0.521315 |
Target: 5'- -cCUGCGACGaUGCGAAUGC-CgGCCu -3' miRNA: 3'- acGGCGCUGUaGCGCUUAUGcGgCGG- -5' |
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7255 | 5' | -56.1 | NC_001900.1 | + | 3872 | 0.68 | 0.521315 |
Target: 5'- cGCCGuCGAgGUcacgccgacCGCGAAggugacgACGCCGaCCu -3' miRNA: 3'- aCGGC-GCUgUA---------GCGCUUa------UGCGGC-GG- -5' |
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7255 | 5' | -56.1 | NC_001900.1 | + | 1342 | 0.68 | 0.500463 |
Target: 5'- aGCgUGCGGCGUUcaacgcgcugGCGGu--CGCCGCCc -3' miRNA: 3'- aCG-GCGCUGUAG----------CGCUuauGCGGCGG- -5' |
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7255 | 5' | -56.1 | NC_001900.1 | + | 33829 | 0.68 | 0.497366 |
Target: 5'- cGCCGagGACAUCGUGgAGUcagccaacgagcugACGCUGCa -3' miRNA: 3'- aCGGCg-CUGUAGCGC-UUA--------------UGCGGCGg -5' |
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7255 | 5' | -56.1 | NC_001900.1 | + | 48517 | 0.69 | 0.490175 |
Target: 5'- gUG-UGUGACGU-GCGGuUACGCCGCUg -3' miRNA: 3'- -ACgGCGCUGUAgCGCUuAUGCGGCGG- -5' |
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7255 | 5' | -56.1 | NC_001900.1 | + | 8715 | 0.69 | 0.490175 |
Target: 5'- -cCCGCGAguUCGUGG--ACGCUGCa -3' miRNA: 3'- acGGCGCUguAGCGCUuaUGCGGCGg -5' |
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7255 | 5' | -56.1 | NC_001900.1 | + | 24607 | 0.69 | 0.490175 |
Target: 5'- gUGCCGgGAUGUUGUaGGUguacGCGCCGaCCg -3' miRNA: 3'- -ACGGCgCUGUAGCGcUUA----UGCGGC-GG- -5' |
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7255 | 5' | -56.1 | NC_001900.1 | + | 38435 | 0.69 | 0.490175 |
Target: 5'- gGCUgacgGCGACGagcccgguauggaguUCGCGAAgucgguggccaagACGCUGCCg -3' miRNA: 3'- aCGG----CGCUGU---------------AGCGCUUa------------UGCGGCGG- -5' |
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7255 | 5' | -56.1 | NC_001900.1 | + | 5688 | 0.69 | 0.479987 |
Target: 5'- cGCCGCGACcUCGaaaCGGucACG-CGCCg -3' miRNA: 3'- aCGGCGCUGuAGC---GCUuaUGCgGCGG- -5' |
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7255 | 5' | -56.1 | NC_001900.1 | + | 35747 | 0.69 | 0.479987 |
Target: 5'- gGCCGUaGCcaGggGUGAAcACGCCGCCg -3' miRNA: 3'- aCGGCGcUG--UagCGCUUaUGCGGCGG- -5' |
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7255 | 5' | -56.1 | NC_001900.1 | + | 34882 | 0.69 | 0.45993 |
Target: 5'- gUGCCGcCGaACGUCuucagcuuGCGAcc-CGCCGCCc -3' miRNA: 3'- -ACGGC-GC-UGUAG--------CGCUuauGCGGCGG- -5' |
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7255 | 5' | -56.1 | NC_001900.1 | + | 7819 | 0.69 | 0.45993 |
Target: 5'- aGCCGCGccccGCAgCGUGGAUcaccguCGCgGCCg -3' miRNA: 3'- aCGGCGC----UGUaGCGCUUAu-----GCGgCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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