miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7255 5' -56.1 NC_001900.1 + 13282 0.67 0.607462
Target:  5'- cGCUGaCGACGUUGUGAcguuGUGgGCCaaggaGCCu -3'
miRNA:   3'- aCGGC-GCUGUAGCGCU----UAUgCGG-----CGG- -5'
7255 5' -56.1 NC_001900.1 + 16890 0.67 0.607462
Target:  5'- cGUCGgGAuCGUCGCcaucgccGCGCCGCUu -3'
miRNA:   3'- aCGGCgCU-GUAGCGcuua---UGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 20164 0.67 0.607462
Target:  5'- cUG-CGCGGCcucGUCGCGggUgaGCGaCUGCUg -3'
miRNA:   3'- -ACgGCGCUG---UAGCGCuuA--UGC-GGCGG- -5'
7255 5' -56.1 NC_001900.1 + 13719 0.67 0.607462
Target:  5'- cGCCGCGAUGU-GCGAccACGaaGCg -3'
miRNA:   3'- aCGGCGCUGUAgCGCUuaUGCggCGg -5'
7255 5' -56.1 NC_001900.1 + 45923 0.67 0.607462
Target:  5'- gGCCGCGAgGaucUCGCGGuccuCGCCuUCg -3'
miRNA:   3'- aCGGCGCUgU---AGCGCUuau-GCGGcGG- -5'
7255 5' -56.1 NC_001900.1 + 41848 0.67 0.607462
Target:  5'- -aCCGCaGcCAUCGCccu--CGCCGCCg -3'
miRNA:   3'- acGGCG-CuGUAGCGcuuauGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 1142 0.67 0.606367
Target:  5'- aGCCGgGGCAggcggCGUGggUggacuuggaggcgGCgguggaGCCGCCg -3'
miRNA:   3'- aCGGCgCUGUa----GCGCuuA-------------UG------CGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 19549 0.67 0.597623
Target:  5'- cGCCGUGGCcgUGgGAGgaacugcccaaggagACGCUGCg -3'
miRNA:   3'- aCGGCGCUGuaGCgCUUa--------------UGCGGCGg -5'
7255 5' -56.1 NC_001900.1 + 29394 0.67 0.596531
Target:  5'- gGCCaucagucgaGCGAUcUCGCGA--GCGCC-CCa -3'
miRNA:   3'- aCGG---------CGCUGuAGCGCUuaUGCGGcGG- -5'
7255 5' -56.1 NC_001900.1 + 27017 0.67 0.596531
Target:  5'- cGUCGCGACgAUgGCGAc--CGUgGCCc -3'
miRNA:   3'- aCGGCGCUG-UAgCGCUuauGCGgCGG- -5'
7255 5' -56.1 NC_001900.1 + 40619 0.67 0.596531
Target:  5'- aGCCcucaccaucuCGAUGUUGCGGAggACGCCaGCCu -3'
miRNA:   3'- aCGGc---------GCUGUAGCGCUUa-UGCGG-CGG- -5'
7255 5' -56.1 NC_001900.1 + 4243 0.67 0.581281
Target:  5'- uUGCCGguaGACGaCGCGAGUuguuuggggucacCGCCgGCCg -3'
miRNA:   3'- -ACGGCg--CUGUaGCGCUUAu------------GCGG-CGG- -5'
7255 5' -56.1 NC_001900.1 + 47074 0.67 0.57477
Target:  5'- cGCUGCGACGUaggucggGCuGAAgaaGUCGCCa -3'
miRNA:   3'- aCGGCGCUGUAg------CG-CUUaugCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 25670 0.67 0.57477
Target:  5'- cGCCGCGACGUgagGCGGcacgGUcACcgGCCGCUu -3'
miRNA:   3'- aCGGCGCUGUAg--CGCU----UA-UG--CGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 3455 0.67 0.563955
Target:  5'- gUGCaGCG-CGUUGUGcu--CGCCGCCg -3'
miRNA:   3'- -ACGgCGCuGUAGCGCuuauGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 32982 0.67 0.563955
Target:  5'- uUGCCGUGcuuGCAgaacCGCucuu-CGCCGCCa -3'
miRNA:   3'- -ACGGCGC---UGUa---GCGcuuauGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 13783 0.68 0.557491
Target:  5'- gGUCGC-ACAUCGCGGcgucgacuuggucagGUGUGaCCGCCa -3'
miRNA:   3'- aCGGCGcUGUAGCGCU---------------UAUGC-GGCGG- -5'
7255 5' -56.1 NC_001900.1 + 27138 0.68 0.553194
Target:  5'- -aUCGCGAUggugAUCGCGGcgAUuCCGCCg -3'
miRNA:   3'- acGGCGCUG----UAGCGCUuaUGcGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 45735 0.68 0.553194
Target:  5'- gGCCGUGA----GCGuGUGCGCCGUg -3'
miRNA:   3'- aCGGCGCUguagCGCuUAUGCGGCGg -5'
7255 5' -56.1 NC_001900.1 + 30026 0.68 0.552122
Target:  5'- cGCCGggaugccagugauCGACAUgCGCGAGguccGCGCCuGCa -3'
miRNA:   3'- aCGGC-------------GCUGUA-GCGCUUa---UGCGG-CGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.