miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7255 5' -56.1 NC_001900.1 + 21563 0.68 0.542496
Target:  5'- gGCUGCGAUGgcCGCGA--ACGCCGa- -3'
miRNA:   3'- aCGGCGCUGUa-GCGCUuaUGCGGCgg -5'
7255 5' -56.1 NC_001900.1 + 22657 0.75 0.211263
Target:  5'- cGCCGCcg-AUCuCGAAUGCGCCGUCa -3'
miRNA:   3'- aCGGCGcugUAGcGCUUAUGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 24037 0.66 0.662241
Target:  5'- aUGCCGaCGACGcCGguuuCGAGguggACcgaGCCGCCa -3'
miRNA:   3'- -ACGGC-GCUGUaGC----GCUUa---UG---CGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 24095 0.66 0.629376
Target:  5'- cGCgGCGACAagaCGUGGca--GCCGCUg -3'
miRNA:   3'- aCGgCGCUGUa--GCGCUuaugCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 24150 0.7 0.390781
Target:  5'- cGCCGCGcCAguacugCGCGAcggucccugccgggAUA-GCCGCCu -3'
miRNA:   3'- aCGGCGCuGUa-----GCGCU--------------UAUgCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 24607 0.69 0.490175
Target:  5'- gUGCCGgGAUGUUGUaGGUguacGCGCCGaCCg -3'
miRNA:   3'- -ACGGCgCUGUAGCGcUUA----UGCGGC-GG- -5'
7255 5' -56.1 NC_001900.1 + 24814 0.66 0.629376
Target:  5'- gGCgGUGGCA-CGCucAU-CGCUGCCg -3'
miRNA:   3'- aCGgCGCUGUaGCGcuUAuGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 24852 0.66 0.673154
Target:  5'- gGCUGUGGUGUCGCccccuuUGCCGCCc -3'
miRNA:   3'- aCGGCGCUGUAGCGcuuau-GCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 25052 0.74 0.240783
Target:  5'- -aCUGgGAcCGUUGCGGcUGCGCCGCCg -3'
miRNA:   3'- acGGCgCU-GUAGCGCUuAUGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 25670 0.67 0.57477
Target:  5'- cGCCGCGACGUgagGCGGcacgGUcACcgGCCGCUu -3'
miRNA:   3'- aCGGCGCUGUAg--CGCU----UA-UG--CGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 25738 0.7 0.411835
Target:  5'- gUGCCGCcucACGUCGCGGcgAUGauCCGCg -3'
miRNA:   3'- -ACGGCGc--UGUAGCGCUuaUGC--GGCGg -5'
7255 5' -56.1 NC_001900.1 + 25754 0.68 0.526581
Target:  5'- gGCCGCGccccggcGCA-CGCGGAgcuucaucgucuCGCCGUCa -3'
miRNA:   3'- aCGGCGC-------UGUaGCGCUUau----------GCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 25864 0.7 0.421206
Target:  5'- cGCCGCaagGACAUCGUGGAUgACGgCGagaCg -3'
miRNA:   3'- aCGGCG---CUGUAGCGCUUA-UGCgGCg--G- -5'
7255 5' -56.1 NC_001900.1 + 26699 0.67 0.615126
Target:  5'- gGCCGCGACcuuagaGCGAcacuaaugaccugcAuuUAUGCUGCCc -3'
miRNA:   3'- aCGGCGCUGuag---CGCU--------------U--AUGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 27017 0.67 0.596531
Target:  5'- cGUCGCGACgAUgGCGAc--CGUgGCCc -3'
miRNA:   3'- aCGGCGCUG-UAgCGCUuauGCGgCGG- -5'
7255 5' -56.1 NC_001900.1 + 27138 0.68 0.553194
Target:  5'- -aUCGCGAUggugAUCGCGGcgAUuCCGCCg -3'
miRNA:   3'- acGGCGCUG----UAGCGCUuaUGcGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 27206 0.77 0.165963
Target:  5'- cGCCGCGAucacCAUCGCGAuga-GCCGUg -3'
miRNA:   3'- aCGGCGCU----GUAGCGCUuaugCGGCGg -5'
7255 5' -56.1 NC_001900.1 + 27563 0.68 0.542496
Target:  5'- cGCCGCuACAUCGCcGAcgGCcggcucaagGCCGUg -3'
miRNA:   3'- aCGGCGcUGUAGCG-CUuaUG---------CGGCGg -5'
7255 5' -56.1 NC_001900.1 + 29394 0.67 0.596531
Target:  5'- gGCCaucagucgaGCGAUcUCGCGA--GCGCC-CCa -3'
miRNA:   3'- aCGG---------CGCUGuAGCGCUuaUGCGGcGG- -5'
7255 5' -56.1 NC_001900.1 + 30026 0.68 0.552122
Target:  5'- cGCCGggaugccagugauCGACAUgCGCGAGguccGCGCCuGCa -3'
miRNA:   3'- aCGGC-------------GCUGUA-GCGCUUa---UGCGG-CGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.