miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7255 5' -56.1 NC_001900.1 + 36183 0.66 0.633763
Target:  5'- cGCCuCGGCAgccgaaccccucucCGgGAcgACGCCGUCg -3'
miRNA:   3'- aCGGcGCUGUa-------------GCgCUuaUGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 35979 0.66 0.639246
Target:  5'- gUGCU-CGACcagcaugAUCGCGAuguuCGCCGUCg -3'
miRNA:   3'- -ACGGcGCUG-------UAGCGCUuau-GCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 35747 0.69 0.479987
Target:  5'- gGCCGUaGCcaGggGUGAAcACGCCGCCg -3'
miRNA:   3'- aCGGCGcUG--UagCGCUUaUGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 35168 0.66 0.640342
Target:  5'- cGUCGCGACGaggaccaCGaCGAcUACGCUGaCCu -3'
miRNA:   3'- aCGGCGCUGUa------GC-GCUuAUGCGGC-GG- -5'
7255 5' -56.1 NC_001900.1 + 34882 0.69 0.45993
Target:  5'- gUGCCGcCGaACGUCuucagcuuGCGAcc-CGCCGCCc -3'
miRNA:   3'- -ACGGC-GC-UGUAG--------CGCUuauGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 33829 0.68 0.497366
Target:  5'- cGCCGagGACAUCGUGgAGUcagccaacgagcugACGCUGCa -3'
miRNA:   3'- aCGGCg-CUGUAGCGC-UUA--------------UGCGGCGg -5'
7255 5' -56.1 NC_001900.1 + 33706 0.72 0.341728
Target:  5'- cGCCuaCGAgGgCGUGGAUGuCGCCGCCg -3'
miRNA:   3'- aCGGc-GCUgUaGCGCUUAU-GCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 33309 0.68 0.542496
Target:  5'- cGCCGUGGCuggUGcCGAAgUACGCCaGCg -3'
miRNA:   3'- aCGGCGCUGua-GC-GCUU-AUGCGG-CGg -5'
7255 5' -56.1 NC_001900.1 + 32982 0.67 0.563955
Target:  5'- uUGCCGUGcuuGCAgaacCGCucuu-CGCCGCCa -3'
miRNA:   3'- -ACGGCGC---UGUa---GCGcuuauGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 32683 0.68 0.521315
Target:  5'- gGCCaGCGAacucCGCGAGUuCGuCUGCCg -3'
miRNA:   3'- aCGG-CGCUgua-GCGCUUAuGC-GGCGG- -5'
7255 5' -56.1 NC_001900.1 + 30026 0.68 0.552122
Target:  5'- cGCCGggaugccagugauCGACAUgCGCGAGguccGCGCCuGCa -3'
miRNA:   3'- aCGGC-------------GCUGUA-GCGCUUa---UGCGG-CGg -5'
7255 5' -56.1 NC_001900.1 + 29394 0.67 0.596531
Target:  5'- gGCCaucagucgaGCGAUcUCGCGA--GCGCC-CCa -3'
miRNA:   3'- aCGG---------CGCUGuAGCGCUuaUGCGGcGG- -5'
7255 5' -56.1 NC_001900.1 + 27563 0.68 0.542496
Target:  5'- cGCCGCuACAUCGCcGAcgGCcggcucaagGCCGUg -3'
miRNA:   3'- aCGGCGcUGUAGCG-CUuaUG---------CGGCGg -5'
7255 5' -56.1 NC_001900.1 + 27206 0.77 0.165963
Target:  5'- cGCCGCGAucacCAUCGCGAuga-GCCGUg -3'
miRNA:   3'- aCGGCGCU----GUAGCGCUuaugCGGCGg -5'
7255 5' -56.1 NC_001900.1 + 27138 0.68 0.553194
Target:  5'- -aUCGCGAUggugAUCGCGGcgAUuCCGCCg -3'
miRNA:   3'- acGGCGCUG----UAGCGCUuaUGcGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 27017 0.67 0.596531
Target:  5'- cGUCGCGACgAUgGCGAc--CGUgGCCc -3'
miRNA:   3'- aCGGCGCUG-UAgCGCUuauGCGgCGG- -5'
7255 5' -56.1 NC_001900.1 + 26699 0.67 0.615126
Target:  5'- gGCCGCGACcuuagaGCGAcacuaaugaccugcAuuUAUGCUGCCc -3'
miRNA:   3'- aCGGCGCUGuag---CGCU--------------U--AUGCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 25864 0.7 0.421206
Target:  5'- cGCCGCaagGACAUCGUGGAUgACGgCGagaCg -3'
miRNA:   3'- aCGGCG---CUGUAGCGCUUA-UGCgGCg--G- -5'
7255 5' -56.1 NC_001900.1 + 25754 0.68 0.526581
Target:  5'- gGCCGCGccccggcGCA-CGCGGAgcuucaucgucuCGCCGUCa -3'
miRNA:   3'- aCGGCGC-------UGUaGCGCUUau----------GCGGCGG- -5'
7255 5' -56.1 NC_001900.1 + 25738 0.7 0.411835
Target:  5'- gUGCCGCcucACGUCGCGGcgAUGauCCGCg -3'
miRNA:   3'- -ACGGCGc--UGUAGCGCUuaUGC--GGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.