miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7257 3' -54.2 NC_001900.1 + 46310 0.66 0.761917
Target:  5'- aCCUUGAcUGCcacccGUGACCGCGACg- -3'
miRNA:   3'- aGGAGCUaGCGuu---CGUUGGCGCUGac -5'
7257 3' -54.2 NC_001900.1 + 6262 0.66 0.75146
Target:  5'- --aUCGA-CGCGGGCGcaGCCGCGAa-- -3'
miRNA:   3'- aggAGCUaGCGUUCGU--UGGCGCUgac -5'
7257 3' -54.2 NC_001900.1 + 18520 0.66 0.740878
Target:  5'- uUCCUCGAagccgUUGCcgAAGCccucGGCCGUGAaCUGa -3'
miRNA:   3'- -AGGAGCU-----AGCG--UUCG----UUGGCGCU-GAC- -5'
7257 3' -54.2 NC_001900.1 + 27590 0.66 0.740878
Target:  5'- uUCCUCGG-CGUGAGCAccaagacggugcGCCGCuACa- -3'
miRNA:   3'- -AGGAGCUaGCGUUCGU------------UGGCGcUGac -5'
7257 3' -54.2 NC_001900.1 + 42379 0.66 0.740878
Target:  5'- gCgUCGAUCGCucGAGCGAccauCCGCucaggauggaGACUGa -3'
miRNA:   3'- aGgAGCUAGCG--UUCGUU----GGCG----------CUGAC- -5'
7257 3' -54.2 NC_001900.1 + 11878 0.66 0.740878
Target:  5'- -aCUCGAUCGcCGAGU--CCGCGAa-- -3'
miRNA:   3'- agGAGCUAGC-GUUCGuuGGCGCUgac -5'
7257 3' -54.2 NC_001900.1 + 27889 0.66 0.730182
Target:  5'- cUCCUuucacagucCGAUCGCuGGGCcgcuGCCGUGGCg- -3'
miRNA:   3'- -AGGA---------GCUAGCG-UUCGu---UGGCGCUGac -5'
7257 3' -54.2 NC_001900.1 + 23441 0.66 0.719385
Target:  5'- gUCCUUGAUCGCGuAGUAGCCucugccCGAUc- -3'
miRNA:   3'- -AGGAGCUAGCGU-UCGUUGGc-----GCUGac -5'
7257 3' -54.2 NC_001900.1 + 20086 0.66 0.708499
Target:  5'- aUCCaacugCGGcgcugcaagCGCGAGCAGgaGCGACUGa -3'
miRNA:   3'- -AGGa----GCUa--------GCGUUCGUUggCGCUGAC- -5'
7257 3' -54.2 NC_001900.1 + 2216 0.67 0.697535
Target:  5'- cCCUCGggUGCGuuuCGACCGCGAg-- -3'
miRNA:   3'- aGGAGCuaGCGUuc-GUUGGCGCUgac -5'
7257 3' -54.2 NC_001900.1 + 43365 0.67 0.686506
Target:  5'- cUCUUCGAUCu--GGuCGACCGCGAUg- -3'
miRNA:   3'- -AGGAGCUAGcguUC-GUUGGCGCUGac -5'
7257 3' -54.2 NC_001900.1 + 37536 0.67 0.675423
Target:  5'- aUCCcguUCGAUgacCGCAAGCAGCUcaaGGCUGu -3'
miRNA:   3'- -AGG---AGCUA---GCGUUCGUUGGcg-CUGAC- -5'
7257 3' -54.2 NC_001900.1 + 2587 0.67 0.675423
Target:  5'- --aUCGcUUGCAGGUuaGACCGCGAgUGg -3'
miRNA:   3'- aggAGCuAGCGUUCG--UUGGCGCUgAC- -5'
7257 3' -54.2 NC_001900.1 + 12759 0.67 0.664298
Target:  5'- -aCUCGAUgaacaGCGGGCGACCGUu-CUGg -3'
miRNA:   3'- agGAGCUAg----CGUUCGUUGGCGcuGAC- -5'
7257 3' -54.2 NC_001900.1 + 29641 0.67 0.664298
Target:  5'- gCCUCGuUgGCGAGCu--UGCGGCUGu -3'
miRNA:   3'- aGGAGCuAgCGUUCGuugGCGCUGAC- -5'
7257 3' -54.2 NC_001900.1 + 38464 0.67 0.652025
Target:  5'- uUCCUCGGguaUCGCAacgugaacauccuGGCuGACgGCGACg- -3'
miRNA:   3'- -AGGAGCU---AGCGU-------------UCG-UUGgCGCUGac -5'
7257 3' -54.2 NC_001900.1 + 895 0.68 0.641965
Target:  5'- cUCCUCGAaggUCGacCAGGCGcuuuuCCGCG-CUGg -3'
miRNA:   3'- -AGGAGCU---AGC--GUUCGUu----GGCGCuGAC- -5'
7257 3' -54.2 NC_001900.1 + 27986 0.68 0.63078
Target:  5'- uUCCUCGGgaUCGCcacGGCAGCgGCccagcgaucgGACUGu -3'
miRNA:   3'- -AGGAGCU--AGCGu--UCGUUGgCG----------CUGAC- -5'
7257 3' -54.2 NC_001900.1 + 17961 0.68 0.63078
Target:  5'- aUCCcgCGAUCGCAcAGCucgcuCCGUcGCUGg -3'
miRNA:   3'- -AGGa-GCUAGCGU-UCGuu---GGCGcUGAC- -5'
7257 3' -54.2 NC_001900.1 + 43800 0.68 0.619595
Target:  5'- cUCCUCGcugugagCGCGAGCGaaccggaacGCCGCuuCUGg -3'
miRNA:   3'- -AGGAGCua-----GCGUUCGU---------UGGCGcuGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.