Results 1 - 20 of 34 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
7257 | 3' | -54.2 | NC_001900.1 | + | 46310 | 0.66 | 0.761917 |
Target: 5'- aCCUUGAcUGCcacccGUGACCGCGACg- -3' miRNA: 3'- aGGAGCUaGCGuu---CGUUGGCGCUGac -5' |
|||||||
7257 | 3' | -54.2 | NC_001900.1 | + | 6262 | 0.66 | 0.75146 |
Target: 5'- --aUCGA-CGCGGGCGcaGCCGCGAa-- -3' miRNA: 3'- aggAGCUaGCGUUCGU--UGGCGCUgac -5' |
|||||||
7257 | 3' | -54.2 | NC_001900.1 | + | 27590 | 0.66 | 0.740878 |
Target: 5'- uUCCUCGG-CGUGAGCAccaagacggugcGCCGCuACa- -3' miRNA: 3'- -AGGAGCUaGCGUUCGU------------UGGCGcUGac -5' |
|||||||
7257 | 3' | -54.2 | NC_001900.1 | + | 11878 | 0.66 | 0.740878 |
Target: 5'- -aCUCGAUCGcCGAGU--CCGCGAa-- -3' miRNA: 3'- agGAGCUAGC-GUUCGuuGGCGCUgac -5' |
|||||||
7257 | 3' | -54.2 | NC_001900.1 | + | 42379 | 0.66 | 0.740878 |
Target: 5'- gCgUCGAUCGCucGAGCGAccauCCGCucaggauggaGACUGa -3' miRNA: 3'- aGgAGCUAGCG--UUCGUU----GGCG----------CUGAC- -5' |
|||||||
7257 | 3' | -54.2 | NC_001900.1 | + | 18520 | 0.66 | 0.740878 |
Target: 5'- uUCCUCGAagccgUUGCcgAAGCccucGGCCGUGAaCUGa -3' miRNA: 3'- -AGGAGCU-----AGCG--UUCG----UUGGCGCU-GAC- -5' |
|||||||
7257 | 3' | -54.2 | NC_001900.1 | + | 27889 | 0.66 | 0.730182 |
Target: 5'- cUCCUuucacagucCGAUCGCuGGGCcgcuGCCGUGGCg- -3' miRNA: 3'- -AGGA---------GCUAGCG-UUCGu---UGGCGCUGac -5' |
|||||||
7257 | 3' | -54.2 | NC_001900.1 | + | 23441 | 0.66 | 0.719385 |
Target: 5'- gUCCUUGAUCGCGuAGUAGCCucugccCGAUc- -3' miRNA: 3'- -AGGAGCUAGCGU-UCGUUGGc-----GCUGac -5' |
|||||||
7257 | 3' | -54.2 | NC_001900.1 | + | 20086 | 0.66 | 0.708499 |
Target: 5'- aUCCaacugCGGcgcugcaagCGCGAGCAGgaGCGACUGa -3' miRNA: 3'- -AGGa----GCUa--------GCGUUCGUUggCGCUGAC- -5' |
|||||||
7257 | 3' | -54.2 | NC_001900.1 | + | 2216 | 0.67 | 0.697535 |
Target: 5'- cCCUCGggUGCGuuuCGACCGCGAg-- -3' miRNA: 3'- aGGAGCuaGCGUuc-GUUGGCGCUgac -5' |
|||||||
7257 | 3' | -54.2 | NC_001900.1 | + | 43365 | 0.67 | 0.686506 |
Target: 5'- cUCUUCGAUCu--GGuCGACCGCGAUg- -3' miRNA: 3'- -AGGAGCUAGcguUC-GUUGGCGCUGac -5' |
|||||||
7257 | 3' | -54.2 | NC_001900.1 | + | 37536 | 0.67 | 0.675423 |
Target: 5'- aUCCcguUCGAUgacCGCAAGCAGCUcaaGGCUGu -3' miRNA: 3'- -AGG---AGCUA---GCGUUCGUUGGcg-CUGAC- -5' |
|||||||
7257 | 3' | -54.2 | NC_001900.1 | + | 2587 | 0.67 | 0.675423 |
Target: 5'- --aUCGcUUGCAGGUuaGACCGCGAgUGg -3' miRNA: 3'- aggAGCuAGCGUUCG--UUGGCGCUgAC- -5' |
|||||||
7257 | 3' | -54.2 | NC_001900.1 | + | 12759 | 0.67 | 0.664298 |
Target: 5'- -aCUCGAUgaacaGCGGGCGACCGUu-CUGg -3' miRNA: 3'- agGAGCUAg----CGUUCGUUGGCGcuGAC- -5' |
|||||||
7257 | 3' | -54.2 | NC_001900.1 | + | 29641 | 0.67 | 0.664298 |
Target: 5'- gCCUCGuUgGCGAGCu--UGCGGCUGu -3' miRNA: 3'- aGGAGCuAgCGUUCGuugGCGCUGAC- -5' |
|||||||
7257 | 3' | -54.2 | NC_001900.1 | + | 38464 | 0.67 | 0.652025 |
Target: 5'- uUCCUCGGguaUCGCAacgugaacauccuGGCuGACgGCGACg- -3' miRNA: 3'- -AGGAGCU---AGCGU-------------UCG-UUGgCGCUGac -5' |
|||||||
7257 | 3' | -54.2 | NC_001900.1 | + | 895 | 0.68 | 0.641965 |
Target: 5'- cUCCUCGAaggUCGacCAGGCGcuuuuCCGCG-CUGg -3' miRNA: 3'- -AGGAGCU---AGC--GUUCGUu----GGCGCuGAC- -5' |
|||||||
7257 | 3' | -54.2 | NC_001900.1 | + | 27986 | 0.68 | 0.63078 |
Target: 5'- uUCCUCGGgaUCGCcacGGCAGCgGCccagcgaucgGACUGu -3' miRNA: 3'- -AGGAGCU--AGCGu--UCGUUGgCG----------CUGAC- -5' |
|||||||
7257 | 3' | -54.2 | NC_001900.1 | + | 17961 | 0.68 | 0.63078 |
Target: 5'- aUCCcgCGAUCGCAcAGCucgcuCCGUcGCUGg -3' miRNA: 3'- -AGGa-GCUAGCGU-UCGuu---GGCGcUGAC- -5' |
|||||||
7257 | 3' | -54.2 | NC_001900.1 | + | 37150 | 0.68 | 0.619595 |
Target: 5'- aUCUCGA-CGCAcGGCcACCGUGGCg- -3' miRNA: 3'- aGGAGCUaGCGU-UCGuUGGCGCUGac -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home