Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7257 | 3' | -54.2 | NC_001900.1 | + | 43800 | 0.68 | 0.619595 |
Target: 5'- cUCCUCGcugugagCGCGAGCGaaccggaacGCCGCuuCUGg -3' miRNA: 3'- -AGGAGCua-----GCGUUCGU---------UGGCGcuGAC- -5' |
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7257 | 3' | -54.2 | NC_001900.1 | + | 24109 | 0.68 | 0.60619 |
Target: 5'- gCCUCGGcaccgagguuggCGCGGGCuucgGCCGCG-CUGg -3' miRNA: 3'- aGGAGCUa-----------GCGUUCGu---UGGCGCuGAC- -5' |
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7257 | 3' | -54.2 | NC_001900.1 | + | 44231 | 0.68 | 0.59727 |
Target: 5'- gCCUCGAcacCGUAAGUcAUCGCGACc- -3' miRNA: 3'- aGGAGCUa--GCGUUCGuUGGCGCUGac -5' |
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7257 | 3' | -54.2 | NC_001900.1 | + | 15223 | 0.68 | 0.59727 |
Target: 5'- cCCUCGAagccgaacUCGgGAGCGuGCCuCGGCUGg -3' miRNA: 3'- aGGAGCU--------AGCgUUCGU-UGGcGCUGAC- -5' |
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7257 | 3' | -54.2 | NC_001900.1 | + | 18104 | 0.69 | 0.586149 |
Target: 5'- uUCCU-GAUCGguGGCAucuCC-CGGCUGg -3' miRNA: 3'- -AGGAgCUAGCguUCGUu--GGcGCUGAC- -5' |
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7257 | 3' | -54.2 | NC_001900.1 | + | 27093 | 0.69 | 0.575068 |
Target: 5'- aUgUCGGUCGCGGGCAAC-GUGGCc- -3' miRNA: 3'- aGgAGCUAGCGUUCGUUGgCGCUGac -5' |
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7257 | 3' | -54.2 | NC_001900.1 | + | 10708 | 0.69 | 0.553059 |
Target: 5'- cUCUCcAUCGCgGAGUGGCUGCGGCUa -3' miRNA: 3'- aGGAGcUAGCG-UUCGUUGGCGCUGAc -5' |
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7257 | 3' | -54.2 | NC_001900.1 | + | 20171 | 0.69 | 0.542147 |
Target: 5'- gCCUCG-UCGCGGGUGA--GCGACUGc -3' miRNA: 3'- aGGAGCuAGCGUUCGUUggCGCUGAC- -5' |
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7257 | 3' | -54.2 | NC_001900.1 | + | 9888 | 0.7 | 0.509875 |
Target: 5'- aUCCU-GAUgcugaUGCAGGCGACUGCGgaGCUGa -3' miRNA: 3'- -AGGAgCUA-----GCGUUCGUUGGCGC--UGAC- -5' |
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7257 | 3' | -54.2 | NC_001900.1 | + | 33512 | 0.7 | 0.509875 |
Target: 5'- gCUUUGAUCGC-AGCAGCCuCGuACUGc -3' miRNA: 3'- aGGAGCUAGCGuUCGUUGGcGC-UGAC- -5' |
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7257 | 3' | -54.2 | NC_001900.1 | + | 9370 | 0.71 | 0.447978 |
Target: 5'- -aCUCGAUCGCAgAGCGACa--GGCUGu -3' miRNA: 3'- agGAGCUAGCGU-UCGUUGgcgCUGAC- -5' |
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7257 | 3' | -54.2 | NC_001900.1 | + | 13309 | 0.73 | 0.338013 |
Target: 5'- cUCCUCGGUCGCAGGCucCUGCu---- -3' miRNA: 3'- -AGGAGCUAGCGUUCGuuGGCGcugac -5' |
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7257 | 3' | -54.2 | NC_001900.1 | + | 27012 | 0.77 | 0.201122 |
Target: 5'- aUCCUCG-UCGCGacgauGGCGACCGUGGCc- -3' miRNA: 3'- -AGGAGCuAGCGU-----UCGUUGGCGCUGac -5' |
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7257 | 3' | -54.2 | NC_001900.1 | + | 941 | 1.08 | 0.001316 |
Target: 5'- cUCCUCGAUCGCAAGCAACCGCGACUGc -3' miRNA: 3'- -AGGAGCUAGCGUUCGUUGGCGCUGAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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