Results 21 - 34 of 34 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7257 | 3' | -54.2 | NC_001900.1 | + | 27590 | 0.66 | 0.740878 |
Target: 5'- uUCCUCGG-CGUGAGCAccaagacggugcGCCGCuACa- -3' miRNA: 3'- -AGGAGCUaGCGUUCGU------------UGGCGcUGac -5' |
|||||||
7257 | 3' | -54.2 | NC_001900.1 | + | 18520 | 0.66 | 0.740878 |
Target: 5'- uUCCUCGAagccgUUGCcgAAGCccucGGCCGUGAaCUGa -3' miRNA: 3'- -AGGAGCU-----AGCG--UUCG----UUGGCGCU-GAC- -5' |
|||||||
7257 | 3' | -54.2 | NC_001900.1 | + | 23441 | 0.66 | 0.719385 |
Target: 5'- gUCCUUGAUCGCGuAGUAGCCucugccCGAUc- -3' miRNA: 3'- -AGGAGCUAGCGU-UCGUUGGc-----GCUGac -5' |
|||||||
7257 | 3' | -54.2 | NC_001900.1 | + | 2216 | 0.67 | 0.697535 |
Target: 5'- cCCUCGggUGCGuuuCGACCGCGAg-- -3' miRNA: 3'- aGGAGCuaGCGUuc-GUUGGCGCUgac -5' |
|||||||
7257 | 3' | -54.2 | NC_001900.1 | + | 2587 | 0.67 | 0.675423 |
Target: 5'- --aUCGcUUGCAGGUuaGACCGCGAgUGg -3' miRNA: 3'- aggAGCuAGCGUUCG--UUGGCGCUgAC- -5' |
|||||||
7257 | 3' | -54.2 | NC_001900.1 | + | 37536 | 0.67 | 0.675423 |
Target: 5'- aUCCcguUCGAUgacCGCAAGCAGCUcaaGGCUGu -3' miRNA: 3'- -AGG---AGCUA---GCGUUCGUUGGcg-CUGAC- -5' |
|||||||
7257 | 3' | -54.2 | NC_001900.1 | + | 12759 | 0.67 | 0.664298 |
Target: 5'- -aCUCGAUgaacaGCGGGCGACCGUu-CUGg -3' miRNA: 3'- agGAGCUAg----CGUUCGUUGGCGcuGAC- -5' |
|||||||
7257 | 3' | -54.2 | NC_001900.1 | + | 38464 | 0.67 | 0.652025 |
Target: 5'- uUCCUCGGguaUCGCAacgugaacauccuGGCuGACgGCGACg- -3' miRNA: 3'- -AGGAGCU---AGCGU-------------UCG-UUGgCGCUGac -5' |
|||||||
7257 | 3' | -54.2 | NC_001900.1 | + | 27986 | 0.68 | 0.63078 |
Target: 5'- uUCCUCGGgaUCGCcacGGCAGCgGCccagcgaucgGACUGu -3' miRNA: 3'- -AGGAGCU--AGCGu--UCGUUGgCG----------CUGAC- -5' |
|||||||
7257 | 3' | -54.2 | NC_001900.1 | + | 37150 | 0.68 | 0.619595 |
Target: 5'- aUCUCGA-CGCAcGGCcACCGUGGCg- -3' miRNA: 3'- aGGAGCUaGCGU-UCGuUGGCGCUGac -5' |
|||||||
7257 | 3' | -54.2 | NC_001900.1 | + | 24109 | 0.68 | 0.60619 |
Target: 5'- gCCUCGGcaccgagguuggCGCGGGCuucgGCCGCG-CUGg -3' miRNA: 3'- aGGAGCUa-----------GCGUUCGu---UGGCGCuGAC- -5' |
|||||||
7257 | 3' | -54.2 | NC_001900.1 | + | 15223 | 0.68 | 0.59727 |
Target: 5'- cCCUCGAagccgaacUCGgGAGCGuGCCuCGGCUGg -3' miRNA: 3'- aGGAGCU--------AGCgUUCGU-UGGcGCUGAC- -5' |
|||||||
7257 | 3' | -54.2 | NC_001900.1 | + | 13309 | 0.73 | 0.338013 |
Target: 5'- cUCCUCGGUCGCAGGCucCUGCu---- -3' miRNA: 3'- -AGGAGCUAGCGUUCGuuGGCGcugac -5' |
|||||||
7257 | 3' | -54.2 | NC_001900.1 | + | 46310 | 0.66 | 0.761917 |
Target: 5'- aCCUUGAcUGCcacccGUGACCGCGACg- -3' miRNA: 3'- aGGAGCUaGCGuu---CGUUGGCGCUGac -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home