Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7257 | 3' | -54.2 | NC_001900.1 | + | 27093 | 0.69 | 0.575068 |
Target: 5'- aUgUCGGUCGCGGGCAAC-GUGGCc- -3' miRNA: 3'- aGgAGCUAGCGUUCGUUGgCGCUGac -5' |
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7257 | 3' | -54.2 | NC_001900.1 | + | 27590 | 0.66 | 0.740878 |
Target: 5'- uUCCUCGG-CGUGAGCAccaagacggugcGCCGCuACa- -3' miRNA: 3'- -AGGAGCUaGCGUUCGU------------UGGCGcUGac -5' |
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7257 | 3' | -54.2 | NC_001900.1 | + | 27889 | 0.66 | 0.730182 |
Target: 5'- cUCCUuucacagucCGAUCGCuGGGCcgcuGCCGUGGCg- -3' miRNA: 3'- -AGGA---------GCUAGCG-UUCGu---UGGCGCUGac -5' |
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7257 | 3' | -54.2 | NC_001900.1 | + | 27986 | 0.68 | 0.63078 |
Target: 5'- uUCCUCGGgaUCGCcacGGCAGCgGCccagcgaucgGACUGu -3' miRNA: 3'- -AGGAGCU--AGCGu--UCGUUGgCG----------CUGAC- -5' |
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7257 | 3' | -54.2 | NC_001900.1 | + | 29641 | 0.67 | 0.664298 |
Target: 5'- gCCUCGuUgGCGAGCu--UGCGGCUGu -3' miRNA: 3'- aGGAGCuAgCGUUCGuugGCGCUGAC- -5' |
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7257 | 3' | -54.2 | NC_001900.1 | + | 33512 | 0.7 | 0.509875 |
Target: 5'- gCUUUGAUCGC-AGCAGCCuCGuACUGc -3' miRNA: 3'- aGGAGCUAGCGuUCGUUGGcGC-UGAC- -5' |
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7257 | 3' | -54.2 | NC_001900.1 | + | 37150 | 0.68 | 0.619595 |
Target: 5'- aUCUCGA-CGCAcGGCcACCGUGGCg- -3' miRNA: 3'- aGGAGCUaGCGU-UCGuUGGCGCUGac -5' |
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7257 | 3' | -54.2 | NC_001900.1 | + | 37536 | 0.67 | 0.675423 |
Target: 5'- aUCCcguUCGAUgacCGCAAGCAGCUcaaGGCUGu -3' miRNA: 3'- -AGG---AGCUA---GCGUUCGUUGGcg-CUGAC- -5' |
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7257 | 3' | -54.2 | NC_001900.1 | + | 38464 | 0.67 | 0.652025 |
Target: 5'- uUCCUCGGguaUCGCAacgugaacauccuGGCuGACgGCGACg- -3' miRNA: 3'- -AGGAGCU---AGCGU-------------UCG-UUGgCGCUGac -5' |
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7257 | 3' | -54.2 | NC_001900.1 | + | 42379 | 0.66 | 0.740878 |
Target: 5'- gCgUCGAUCGCucGAGCGAccauCCGCucaggauggaGACUGa -3' miRNA: 3'- aGgAGCUAGCG--UUCGUU----GGCG----------CUGAC- -5' |
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7257 | 3' | -54.2 | NC_001900.1 | + | 43365 | 0.67 | 0.686506 |
Target: 5'- cUCUUCGAUCu--GGuCGACCGCGAUg- -3' miRNA: 3'- -AGGAGCUAGcguUC-GUUGGCGCUGac -5' |
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7257 | 3' | -54.2 | NC_001900.1 | + | 43800 | 0.68 | 0.619595 |
Target: 5'- cUCCUCGcugugagCGCGAGCGaaccggaacGCCGCuuCUGg -3' miRNA: 3'- -AGGAGCua-----GCGUUCGU---------UGGCGcuGAC- -5' |
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7257 | 3' | -54.2 | NC_001900.1 | + | 44231 | 0.68 | 0.59727 |
Target: 5'- gCCUCGAcacCGUAAGUcAUCGCGACc- -3' miRNA: 3'- aGGAGCUa--GCGUUCGuUGGCGCUGac -5' |
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7257 | 3' | -54.2 | NC_001900.1 | + | 46310 | 0.66 | 0.761917 |
Target: 5'- aCCUUGAcUGCcacccGUGACCGCGACg- -3' miRNA: 3'- aGGAGCUaGCGuu---CGUUGGCGCUGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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