Results 1 - 20 of 35 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7259 | 3' | -60 | NC_001900.1 | + | 1679 | 1.13 | 0.000183 |
Target: 5'- gGGCCACGUCCCGCCGGUCUACUCCGCg -3' miRNA: 3'- -CCGGUGCAGGGCGGCCAGAUGAGGCG- -5' |
|||||||
7259 | 3' | -60 | NC_001900.1 | + | 14436 | 0.77 | 0.085671 |
Target: 5'- cGGCCACGcCCCGuCCGGguu-CUUCGCg -3' miRNA: 3'- -CCGGUGCaGGGC-GGCCagauGAGGCG- -5' |
|||||||
7259 | 3' | -60 | NC_001900.1 | + | 10294 | 0.77 | 0.095622 |
Target: 5'- uGGCgACGUUCCcCCGGacaUGCUCCGCa -3' miRNA: 3'- -CCGgUGCAGGGcGGCCag-AUGAGGCG- -5' |
|||||||
7259 | 3' | -60 | NC_001900.1 | + | 3155 | 0.77 | 0.095622 |
Target: 5'- cGGUCACGucaacgaccuUCCCGCCGGUCgGgUCgGCg -3' miRNA: 3'- -CCGGUGC----------AGGGCGGCCAGaUgAGgCG- -5' |
|||||||
7259 | 3' | -60 | NC_001900.1 | + | 5561 | 0.73 | 0.163772 |
Target: 5'- gGGCCugGUCCCcacGCCcGaCUACUUCGUg -3' miRNA: 3'- -CCGGugCAGGG---CGGcCaGAUGAGGCG- -5' |
|||||||
7259 | 3' | -60 | NC_001900.1 | + | 40280 | 0.72 | 0.206904 |
Target: 5'- gGGUCAUGUCCUcgaccgugugGCCGGUCgGCagugagCCGCu -3' miRNA: 3'- -CCGGUGCAGGG----------CGGCCAGaUGa-----GGCG- -5' |
|||||||
7259 | 3' | -60 | NC_001900.1 | + | 3287 | 0.72 | 0.212261 |
Target: 5'- cGGCCGCGacUUCCGCUGGUCga-UCCc- -3' miRNA: 3'- -CCGGUGC--AGGGCGGCCAGaugAGGcg -5' |
|||||||
7259 | 3' | -60 | NC_001900.1 | + | 5493 | 0.72 | 0.217736 |
Target: 5'- cGGUUcgggugucguagGCGUcCCCGCUGGcgUACUCCGCa -3' miRNA: 3'- -CCGG------------UGCA-GGGCGGCCagAUGAGGCG- -5' |
|||||||
7259 | 3' | -60 | NC_001900.1 | + | 32551 | 0.71 | 0.253167 |
Target: 5'- uGGCCucgauguagaACGUCgCGCUGGaaUGCUCCaGCa -3' miRNA: 3'- -CCGG----------UGCAGgGCGGCCagAUGAGG-CG- -5' |
|||||||
7259 | 3' | -60 | NC_001900.1 | + | 46929 | 0.7 | 0.259513 |
Target: 5'- gGGCCACGUCUacguUGUCGGga---UCCGCg -3' miRNA: 3'- -CCGGUGCAGG----GCGGCCagaugAGGCG- -5' |
|||||||
7259 | 3' | -60 | NC_001900.1 | + | 23217 | 0.7 | 0.272595 |
Target: 5'- cGGUCugGUCCuCGcCCGGgCUGCgcCCGUc -3' miRNA: 3'- -CCGGugCAGG-GC-GGCCaGAUGa-GGCG- -5' |
|||||||
7259 | 3' | -60 | NC_001900.1 | + | 13218 | 0.7 | 0.293203 |
Target: 5'- cGCUggGCGUCUCGUCGGagacCUCCGCg -3' miRNA: 3'- cCGG--UGCAGGGCGGCCagauGAGGCG- -5' |
|||||||
7259 | 3' | -60 | NC_001900.1 | + | 3563 | 0.69 | 0.307605 |
Target: 5'- cGGCCugGUgCauCCGGUCUcGCUguuccCCGCg -3' miRNA: 3'- -CCGGugCAgGgcGGCCAGA-UGA-----GGCG- -5' |
|||||||
7259 | 3' | -60 | NC_001900.1 | + | 43488 | 0.69 | 0.315006 |
Target: 5'- cGGCCAgcuCGgUgCGCCGc-CUGCUCCGCg -3' miRNA: 3'- -CCGGU---GCaGgGCGGCcaGAUGAGGCG- -5' |
|||||||
7259 | 3' | -60 | NC_001900.1 | + | 45781 | 0.69 | 0.322542 |
Target: 5'- cGGCCACGUUCUGCUGGcCca---CGCg -3' miRNA: 3'- -CCGGUGCAGGGCGGCCaGaugagGCG- -5' |
|||||||
7259 | 3' | -60 | NC_001900.1 | + | 31888 | 0.69 | 0.338013 |
Target: 5'- cGGCCucccucucgACGgaaCCGCuCGGUCUcCUCgGCg -3' miRNA: 3'- -CCGG---------UGCag-GGCG-GCCAGAuGAGgCG- -5' |
|||||||
7259 | 3' | -60 | NC_001900.1 | + | 38519 | 0.68 | 0.362218 |
Target: 5'- cGCCAUGUCCCGCgaguagcgGGUCagUGCgaCCGUg -3' miRNA: 3'- cCGGUGCAGGGCGg-------CCAG--AUGa-GGCG- -5' |
|||||||
7259 | 3' | -60 | NC_001900.1 | + | 717 | 0.68 | 0.370549 |
Target: 5'- uGCCACGggCCGCagCGGUCUGgaacguCUaCCGCa -3' miRNA: 3'- cCGGUGCagGGCG--GCCAGAU------GA-GGCG- -5' |
|||||||
7259 | 3' | -60 | NC_001900.1 | + | 24832 | 0.68 | 0.37901 |
Target: 5'- uGCCGC--CCgCGCCGGUCUG-UCCGa -3' miRNA: 3'- cCGGUGcaGG-GCGGCCAGAUgAGGCg -5' |
|||||||
7259 | 3' | -60 | NC_001900.1 | + | 41843 | 0.68 | 0.3876 |
Target: 5'- aGCCAuCGcccUCgCCGCCGGUCUggGCUUgGUc -3' miRNA: 3'- cCGGU-GC---AG-GGCGGCCAGA--UGAGgCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home