Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7259 | 3' | -60 | NC_001900.1 | + | 3563 | 0.69 | 0.307605 |
Target: 5'- cGGCCugGUgCauCCGGUCUcGCUguuccCCGCg -3' miRNA: 3'- -CCGGugCAgGgcGGCCAGA-UGA-----GGCG- -5' |
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7259 | 3' | -60 | NC_001900.1 | + | 45922 | 0.67 | 0.432417 |
Target: 5'- uGGCCGCGaggaUCUCG-CGGUCcucgcCUUCGCg -3' miRNA: 3'- -CCGGUGC----AGGGCgGCCAGau---GAGGCG- -5' |
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7259 | 3' | -60 | NC_001900.1 | + | 1679 | 1.13 | 0.000183 |
Target: 5'- gGGCCACGUCCCGCCGGUCUACUCCGCg -3' miRNA: 3'- -CCGGUGCAGGGCGGCCAGAUGAGGCG- -5' |
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7259 | 3' | -60 | NC_001900.1 | + | 14436 | 0.77 | 0.085671 |
Target: 5'- cGGCCACGcCCCGuCCGGguu-CUUCGCg -3' miRNA: 3'- -CCGGUGCaGGGC-GGCCagauGAGGCG- -5' |
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7259 | 3' | -60 | NC_001900.1 | + | 10294 | 0.77 | 0.095622 |
Target: 5'- uGGCgACGUUCCcCCGGacaUGCUCCGCa -3' miRNA: 3'- -CCGgUGCAGGGcGGCCag-AUGAGGCG- -5' |
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7259 | 3' | -60 | NC_001900.1 | + | 5561 | 0.73 | 0.163772 |
Target: 5'- gGGCCugGUCCCcacGCCcGaCUACUUCGUg -3' miRNA: 3'- -CCGGugCAGGG---CGGcCaGAUGAGGCG- -5' |
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7259 | 3' | -60 | NC_001900.1 | + | 40280 | 0.72 | 0.206904 |
Target: 5'- gGGUCAUGUCCUcgaccgugugGCCGGUCgGCagugagCCGCu -3' miRNA: 3'- -CCGGUGCAGGG----------CGGCCAGaUGa-----GGCG- -5' |
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7259 | 3' | -60 | NC_001900.1 | + | 3287 | 0.72 | 0.212261 |
Target: 5'- cGGCCGCGacUUCCGCUGGUCga-UCCc- -3' miRNA: 3'- -CCGGUGC--AGGGCGGCCAGaugAGGcg -5' |
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7259 | 3' | -60 | NC_001900.1 | + | 32551 | 0.71 | 0.253167 |
Target: 5'- uGGCCucgauguagaACGUCgCGCUGGaaUGCUCCaGCa -3' miRNA: 3'- -CCGG----------UGCAGgGCGGCCagAUGAGG-CG- -5' |
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7259 | 3' | -60 | NC_001900.1 | + | 23885 | 0.67 | 0.432417 |
Target: 5'- cGGCCAgGgcacCCCGaguuCGGUC-AC-CCGCg -3' miRNA: 3'- -CCGGUgCa---GGGCg---GCCAGaUGaGGCG- -5' |
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7259 | 3' | -60 | NC_001900.1 | + | 31668 | 0.67 | 0.432417 |
Target: 5'- aGGUC-CGcCUCGCgGuGUCgagcugACUCCGCa -3' miRNA: 3'- -CCGGuGCaGGGCGgC-CAGa-----UGAGGCG- -5' |
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7259 | 3' | -60 | NC_001900.1 | + | 13733 | 0.67 | 0.431491 |
Target: 5'- -aCCACGaagcggaUCCU-CCGGUCUGCUaCUGCg -3' miRNA: 3'- ccGGUGC-------AGGGcGGCCAGAUGA-GGCG- -5' |
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7259 | 3' | -60 | NC_001900.1 | + | 43488 | 0.69 | 0.315006 |
Target: 5'- cGGCCAgcuCGgUgCGCCGc-CUGCUCCGCg -3' miRNA: 3'- -CCGGU---GCaGgGCGGCcaGAUGAGGCG- -5' |
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7259 | 3' | -60 | NC_001900.1 | + | 40140 | 0.67 | 0.432417 |
Target: 5'- aGCCGCGUCCaGCaGGaCcGCUgCCGCg -3' miRNA: 3'- cCGGUGCAGGgCGgCCaGaUGA-GGCG- -5' |
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7259 | 3' | -60 | NC_001900.1 | + | 31888 | 0.69 | 0.338013 |
Target: 5'- cGGCCucccucucgACGgaaCCGCuCGGUCUcCUCgGCg -3' miRNA: 3'- -CCGG---------UGCag-GGCG-GCCAGAuGAGgCG- -5' |
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7259 | 3' | -60 | NC_001900.1 | + | 19265 | 0.67 | 0.396317 |
Target: 5'- gGGaCCACgGUCCUGgCuGUCgcgagACUCCGUg -3' miRNA: 3'- -CC-GGUG-CAGGGCgGcCAGa----UGAGGCG- -5' |
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7259 | 3' | -60 | NC_001900.1 | + | 41587 | 0.67 | 0.432417 |
Target: 5'- aGGUCACGUCCaGCU--UCUggGCUCCGg -3' miRNA: 3'- -CCGGUGCAGGgCGGccAGA--UGAGGCg -5' |
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7259 | 3' | -60 | NC_001900.1 | + | 323 | 0.66 | 0.467458 |
Target: 5'- gGGCCGgGgaauugauccggcaaCCGCCGGaUCUAgcgCCGCg -3' miRNA: 3'- -CCGGUgCag-------------GGCGGCC-AGAUga-GGCG- -5' |
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7259 | 3' | -60 | NC_001900.1 | + | 38519 | 0.68 | 0.362218 |
Target: 5'- cGCCAUGUCCCGCgaguagcgGGUCagUGCgaCCGUg -3' miRNA: 3'- cCGGUGCAGGGCGg-------CCAG--AUGa-GGCG- -5' |
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7259 | 3' | -60 | NC_001900.1 | + | 717 | 0.68 | 0.370549 |
Target: 5'- uGCCACGggCCGCagCGGUCUGgaacguCUaCCGCa -3' miRNA: 3'- cCGGUGCagGGCG--GCCAGAU------GA-GGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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