miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7262 3' -52.2 NC_001900.1 + 49019 0.69 0.696927
Target:  5'- aUGCCAUCGuCGcAGGUCACGGGggGu -3'
miRNA:   3'- gACGGUGGCuGCaUCUGGUGUUCuuC- -5'
7262 3' -52.2 NC_001900.1 + 48302 0.68 0.73001
Target:  5'- -aGCCACCGAC-UAGuCCGguAGAGu -3'
miRNA:   3'- gaCGGUGGCUGcAUCuGGUguUCUUc -5'
7262 3' -52.2 NC_001900.1 + 46304 0.68 0.751567
Target:  5'- aCUGCCACCcguGACcgcGACgGCAAGAAu -3'
miRNA:   3'- -GACGGUGG---CUGcauCUGgUGUUCUUc -5'
7262 3' -52.2 NC_001900.1 + 46006 0.66 0.858336
Target:  5'- -aGCgCGaaGGCGaGGACCGCGAGAu- -3'
miRNA:   3'- gaCG-GUggCUGCaUCUGGUGUUCUuc -5'
7262 3' -52.2 NC_001900.1 + 44771 0.66 0.858336
Target:  5'- -gGCCAgCGGCcUGGcuGCCGCAGGGGa -3'
miRNA:   3'- gaCGGUgGCUGcAUC--UGGUGUUCUUc -5'
7262 3' -52.2 NC_001900.1 + 42827 0.66 0.822311
Target:  5'- cCUGgUGCCGAUGgacgAGGuCCGCGAGAu- -3'
miRNA:   3'- -GACgGUGGCUGCa---UCU-GGUGUUCUuc -5'
7262 3' -52.2 NC_001900.1 + 41151 0.66 0.839886
Target:  5'- -gGUCACCGGCcUGGcCCGCAacgucucGGAGGa -3'
miRNA:   3'- gaCGGUGGCUGcAUCuGGUGU-------UCUUC- -5'
7262 3' -52.2 NC_001900.1 + 40320 0.71 0.550594
Target:  5'- gCUGCgGCCGugGUuGGCCGCGucGAGu -3'
miRNA:   3'- -GACGgUGGCugCAuCUGGUGUucUUC- -5'
7262 3' -52.2 NC_001900.1 + 36419 0.7 0.617953
Target:  5'- cCUGCUugCgGACGUAGAUCACGGc--- -3'
miRNA:   3'- -GACGGugG-CUGCAUCUGGUGUUcuuc -5'
7262 3' -52.2 NC_001900.1 + 36342 0.71 0.572866
Target:  5'- cCUGCCGCUGGCGaugaaggaacUGGGCUcCAAGAAc -3'
miRNA:   3'- -GACGGUGGCUGC----------AUCUGGuGUUCUUc -5'
7262 3' -52.2 NC_001900.1 + 35768 0.67 0.81275
Target:  5'- -cGCCGCCGACGUAcuGCUcCAGGucGu -3'
miRNA:   3'- gaCGGUGGCUGCAUc-UGGuGUUCuuC- -5'
7262 3' -52.2 NC_001900.1 + 33949 0.66 0.849683
Target:  5'- -cGCgGCUGACGgguACCACGucgAGAAGg -3'
miRNA:   3'- gaCGgUGGCUGCaucUGGUGU---UCUUC- -5'
7262 3' -52.2 NC_001900.1 + 32667 0.67 0.802987
Target:  5'- --aCCACauccuCGACGUGGGCCAUGAGucGg -3'
miRNA:   3'- gacGGUG-----GCUGCAUCUGGUGUUCuuC- -5'
7262 3' -52.2 NC_001900.1 + 31979 0.67 0.782904
Target:  5'- aUGaCCGCCGAgG-AGACCGagcgguuccguCGAGAGGg -3'
miRNA:   3'- gAC-GGUGGCUgCaUCUGGU-----------GUUCUUC- -5'
7262 3' -52.2 NC_001900.1 + 31735 0.7 0.617953
Target:  5'- -aGCCACCuGGCGguuGACCGCAGuGAc- -3'
miRNA:   3'- gaCGGUGG-CUGCau-CUGGUGUU-CUuc -5'
7262 3' -52.2 NC_001900.1 + 31292 0.67 0.793035
Target:  5'- -cGUCGCUGACGgcacGGCCAagaAGGAGGu -3'
miRNA:   3'- gaCGGUGGCUGCau--CUGGUg--UUCUUC- -5'
7262 3' -52.2 NC_001900.1 + 29760 0.66 0.858336
Target:  5'- --cCCACCGcCGUAGACC-CGGccGAAGu -3'
miRNA:   3'- gacGGUGGCuGCAUCUGGuGUU--CUUC- -5'
7262 3' -52.2 NC_001900.1 + 28299 0.74 0.405256
Target:  5'- -cGCUACCGACG-AGGCCguccGCAAGGAc -3'
miRNA:   3'- gaCGGUGGCUGCaUCUGG----UGUUCUUc -5'
7262 3' -52.2 NC_001900.1 + 25588 0.66 0.840788
Target:  5'- gCUGCCcCCG-CGUGGuggucACCAgGAGAGc -3'
miRNA:   3'- -GACGGuGGCuGCAUC-----UGGUgUUCUUc -5'
7262 3' -52.2 NC_001900.1 + 25478 0.68 0.73001
Target:  5'- -aGCCGCCaGCGUGGcucCCACGgcccGGAGGu -3'
miRNA:   3'- gaCGGUGGcUGCAUCu--GGUGU----UCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.