miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7266 3' -65.8 NC_001900.1 + 9370 0.69 0.148129
Target:  5'- uGGaCGGGCACCgugaCGCCGAuggccUCUGGUCGGCg -3'
miRNA:   3'- -UC-GCCCGUGG----GCGGCU-----GGGCUGGCCG- -5'
7266 3' -65.8 NC_001900.1 + 9558 0.67 0.200797
Target:  5'- gGGUGGGauccgaacguCCCGCUGAUCCGGgUGGa -3'
miRNA:   3'- -UCGCCCgu--------GGGCGGCUGGGCUgGCCg -5'
7266 3' -65.8 NC_001900.1 + 10512 0.73 0.074635
Target:  5'- uGCuGGGCACgauggucgaCGCCGACCCGACggucccaGGCu -3'
miRNA:   3'- uCG-CCCGUGg--------GCGGCUGGGCUGg------CCG- -5'
7266 3' -65.8 NC_001900.1 + 10759 0.66 0.243811
Target:  5'- cAGCGucGGUAUgcggaagCUGCCGACCUgGGCCGGg -3'
miRNA:   3'- -UCGC--CCGUG-------GGCGGCUGGG-CUGGCCg -5'
7266 3' -65.8 NC_001900.1 + 11428 0.7 0.133573
Target:  5'- gAGCGGGC-CuuGCCagaugcaauGAgCUGGCUGGCu -3'
miRNA:   3'- -UCGCCCGuGggCGG---------CUgGGCUGGCCG- -5'
7266 3' -65.8 NC_001900.1 + 11543 0.67 0.200797
Target:  5'- cGaaGGCACuccggCCGgCGACCCGAccCCGGUg -3'
miRNA:   3'- uCgcCCGUG-----GGCgGCUGGGCU--GGCCG- -5'
7266 3' -65.8 NC_001900.1 + 11860 0.67 0.200797
Target:  5'- uGCaGGGCGaggaCGCCGACUCGAUCGcCg -3'
miRNA:   3'- uCG-CCCGUgg--GCGGCUGGGCUGGCcG- -5'
7266 3' -65.8 NC_001900.1 + 12341 0.71 0.09747
Target:  5'- -cUGGGCACUcacguCGCCGACCCaGugCGGg -3'
miRNA:   3'- ucGCCCGUGG-----GCGGCUGGG-CugGCCg -5'
7266 3' -65.8 NC_001900.1 + 12749 0.66 0.225529
Target:  5'- cAGCGGGCgACCguucugguccuucgCGCCGuuCagGAUCGGCu -3'
miRNA:   3'- -UCGCCCG-UGG--------------GCGGCugGg-CUGGCCG- -5'
7266 3' -65.8 NC_001900.1 + 13657 0.69 0.147748
Target:  5'- cAGCGGGCuccgaucaaguACCCGCCGGgguuucuCCUGG-CGGUc -3'
miRNA:   3'- -UCGCCCG-----------UGGGCGGCU-------GGGCUgGCCG- -5'
7266 3' -65.8 NC_001900.1 + 13731 0.69 0.140679
Target:  5'- cGGCGGGUacuugaucggaGCCCGCUGAacgUCG-CUGGCg -3'
miRNA:   3'- -UCGCCCG-----------UGGGCGGCUg--GGCuGGCCG- -5'
7266 3' -65.8 NC_001900.1 + 14276 0.67 0.195848
Target:  5'- gAGaCGGcGuCACCCGCCGugCuCGAaccaacCUGGCc -3'
miRNA:   3'- -UC-GCC-C-GUGGGCGGCugG-GCU------GGCCG- -5'
7266 3' -65.8 NC_001900.1 + 14460 0.68 0.177109
Target:  5'- cGCGGGCACCgacacgaaacCGCCuGACCCcgaauacauccuGACCcgagccgccaucGGCg -3'
miRNA:   3'- uCGCCCGUGG----------GCGG-CUGGG------------CUGG------------CCG- -5'
7266 3' -65.8 NC_001900.1 + 16603 0.67 0.194385
Target:  5'- gAGCGGGagcugucgGCCgacguuccggucaaCGCCGACCUGAacgCGGCc -3'
miRNA:   3'- -UCGCCCg-------UGG--------------GCGGCUGGGCUg--GCCG- -5'
7266 3' -65.8 NC_001900.1 + 17263 0.66 0.244402
Target:  5'- -cCGGGCucggGCCgGUCauCUCGACCGGCa -3'
miRNA:   3'- ucGCCCG----UGGgCGGcuGGGCUGGCCG- -5'
7266 3' -65.8 NC_001900.1 + 17573 0.67 0.216298
Target:  5'- cAGCGGacCACCgaGCUGACCCaucgccugcaGACCGGa -3'
miRNA:   3'- -UCGCCc-GUGGg-CGGCUGGG----------CUGGCCg -5'
7266 3' -65.8 NC_001900.1 + 17836 0.66 0.232812
Target:  5'- cGCuGGuCACCuCGCuCGGCCCGuACCuGCc -3'
miRNA:   3'- uCGcCC-GUGG-GCG-GCUGGGC-UGGcCG- -5'
7266 3' -65.8 NC_001900.1 + 18771 0.67 0.216298
Target:  5'- cAGCGGGCgaugACCCGCucgugaaggCGGCUu--CCGGCu -3'
miRNA:   3'- -UCGCCCG----UGGGCG---------GCUGGgcuGGCCG- -5'
7266 3' -65.8 NC_001900.1 + 19610 0.66 0.238548
Target:  5'- gGGCGGGCucaacCCCaCCGACCaguacaucgcacCGAaguggaccguucCCGGCu -3'
miRNA:   3'- -UCGCCCGu----GGGcGGCUGG------------GCU------------GGCCG- -5'
7266 3' -65.8 NC_001900.1 + 21350 0.66 0.249772
Target:  5'- cAGCGGGgGCagGUCGAUcgcgccaCCGACCGcGCc -3'
miRNA:   3'- -UCGCCCgUGggCGGCUG-------GGCUGGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.