miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7266 3' -65.8 NC_001900.1 + 129 0.71 0.100087
Target:  5'- gGGCGaGGCGCUcuagCGUCGGCCCGugcuucugAUCGGCu -3'
miRNA:   3'- -UCGC-CCGUGG----GCGGCUGGGC--------UGGCCG- -5'
7266 3' -65.8 NC_001900.1 + 884 0.66 0.244402
Target:  5'- -aUGGGCAUCCGCuccuCGAaggUCGACCaGGCg -3'
miRNA:   3'- ucGCCCGUGGGCG----GCUg--GGCUGG-CCG- -5'
7266 3' -65.8 NC_001900.1 + 960 0.67 0.191007
Target:  5'- cGCGa-CugCUGCUGGCCuaCGGCCGGCu -3'
miRNA:   3'- uCGCccGugGGCGGCUGG--GCUGGCCG- -5'
7266 3' -65.8 NC_001900.1 + 1175 0.67 0.200797
Target:  5'- cGGCGGuGgAgCCGCCGGaagCGGCCGGg -3'
miRNA:   3'- -UCGCC-CgUgGGCGGCUgg-GCUGGCCg -5'
7266 3' -65.8 NC_001900.1 + 1268 0.68 0.177109
Target:  5'- cGGCGGGU--UCGgUGGuuCGACCGGCa -3'
miRNA:   3'- -UCGCCCGugGGCgGCUggGCUGGCCG- -5'
7266 3' -65.8 NC_001900.1 + 1360 0.68 0.177109
Target:  5'- cGCuGGCGgUCGCCGcCCgCGACCaGCa -3'
miRNA:   3'- uCGcCCGUgGGCGGCuGG-GCUGGcCG- -5'
7266 3' -65.8 NC_001900.1 + 3058 1.1 0.000078
Target:  5'- gAGCGGGCACCCGCCGACCCGACCGGCg -3'
miRNA:   3'- -UCGCCCGUGGGCGGCUGGGCUGGCCG- -5'
7266 3' -65.8 NC_001900.1 + 3122 0.81 0.016977
Target:  5'- cGGCGGGUGCCCGCUcgaucuccaggcgGACCCGucGCCGGUc -3'
miRNA:   3'- -UCGCCCGUGGGCGG-------------CUGGGC--UGGCCG- -5'
7266 3' -65.8 NC_001900.1 + 3353 0.68 0.164117
Target:  5'- uGCGGGCgACCUGUuccuCGaACUggaGACCGGCg -3'
miRNA:   3'- uCGCCCG-UGGGCG----GC-UGGg--CUGGCCG- -5'
7266 3' -65.8 NC_001900.1 + 3940 0.67 0.191007
Target:  5'- cGCcGGUACCCGCCuccacggcgaACgCGGCCGGUc -3'
miRNA:   3'- uCGcCCGUGGGCGGc---------UGgGCUGGCCG- -5'
7266 3' -65.8 NC_001900.1 + 4002 0.7 0.133573
Target:  5'- aGGCGGGUACCgG-CGuCUCGGCCaGCu -3'
miRNA:   3'- -UCGCCCGUGGgCgGCuGGGCUGGcCG- -5'
7266 3' -65.8 NC_001900.1 + 4118 0.71 0.11094
Target:  5'- cGCuGGCAguugguucaUCUGCCGACCggcgaagCGGCCGGCg -3'
miRNA:   3'- uCGcCCGU---------GGGCGGCUGG-------GCUGGCCG- -5'
7266 3' -65.8 NC_001900.1 + 5417 0.66 0.232245
Target:  5'- cAGCGGGgACgCCuaCGACacccgaaCCGACCucGGCa -3'
miRNA:   3'- -UCGCCCgUG-GGcgGCUG-------GGCUGG--CCG- -5'
7266 3' -65.8 NC_001900.1 + 5723 0.68 0.16707
Target:  5'- cGGCGGGCuCaccaaccucgaugaCCGCCGACgCCGGuacaacCUGGCc -3'
miRNA:   3'- -UCGCCCGuG--------------GGCGGCUG-GGCU------GGCCG- -5'
7266 3' -65.8 NC_001900.1 + 6267 0.66 0.256467
Target:  5'- cGCGGGCGCagCCGCgaacaucggCGACaUCGucGCUGGCg -3'
miRNA:   3'- uCGCCCGUG--GGCG---------GCUG-GGC--UGGCCG- -5'
7266 3' -65.8 NC_001900.1 + 6330 0.66 0.227192
Target:  5'- cGCGGcuGCGCCCGCguCGAUCCcGCCccagaucagGGCg -3'
miRNA:   3'- uCGCC--CGUGGGCG--GCUGGGcUGG---------CCG- -5'
7266 3' -65.8 NC_001900.1 + 6498 0.68 0.17268
Target:  5'- cGGCGcGGUcCCCcaGCuCGGCCCG-CUGGCc -3'
miRNA:   3'- -UCGC-CCGuGGG--CG-GCUGGGCuGGCCG- -5'
7266 3' -65.8 NC_001900.1 + 7880 0.72 0.080885
Target:  5'- uGCgGGGCgcgGCuuGCCGaucGCCUGACCGGUc -3'
miRNA:   3'- uCG-CCCG---UGggCGGC---UGGGCUGGCCG- -5'
7266 3' -65.8 NC_001900.1 + 9020 0.66 0.227192
Target:  5'- -cCGGGUugCCGUCGugCCaGACCucGCc -3'
miRNA:   3'- ucGCCCGugGGCGGCugGG-CUGGc-CG- -5'
7266 3' -65.8 NC_001900.1 + 9221 0.72 0.086243
Target:  5'- gAGCGGGCugucaucggacggccACCaC-CCGGCCCGugCGGg -3'
miRNA:   3'- -UCGCCCG---------------UGG-GcGGCUGGGCugGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.