miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7266 3' -65.8 NC_001900.1 + 3058 1.1 0.000078
Target:  5'- gAGCGGGCACCCGCCGACCCGACCGGCg -3'
miRNA:   3'- -UCGCCCGUGGGCGGCUGGGCUGGCCG- -5'
7266 3' -65.8 NC_001900.1 + 14276 0.67 0.195848
Target:  5'- gAGaCGGcGuCACCCGCCGugCuCGAaccaacCUGGCc -3'
miRNA:   3'- -UC-GCC-C-GUGGGCGGCugG-GCU------GGCCG- -5'
7266 3' -65.8 NC_001900.1 + 27261 0.67 0.197815
Target:  5'- --aGGGguUuuGCCGaagcagcuugacugcGCCCGACCGGg -3'
miRNA:   3'- ucgCCCguGggCGGC---------------UGGGCUGGCCg -5'
7266 3' -65.8 NC_001900.1 + 6267 0.66 0.256467
Target:  5'- cGCGGGCGCagCCGCgaacaucggCGACaUCGucGCUGGCg -3'
miRNA:   3'- uCGCCCGUG--GGCG---------GCUG-GGC--UGGCCG- -5'
7266 3' -65.8 NC_001900.1 + 29584 0.71 0.097212
Target:  5'- gAGCGguccaccGGCAgCCGCCGGCCC-AUCGGg -3'
miRNA:   3'- -UCGC-------CCGUgGGCGGCUGGGcUGGCCg -5'
7266 3' -65.8 NC_001900.1 + 4118 0.71 0.11094
Target:  5'- cGCuGGCAguugguucaUCUGCCGACCggcgaagCGGCCGGCg -3'
miRNA:   3'- uCGcCCGU---------GGGCGGCUGG-------GCUGGCCG- -5'
7266 3' -65.8 NC_001900.1 + 3353 0.68 0.164117
Target:  5'- uGCGGGCgACCUGUuccuCGaACUggaGACCGGCg -3'
miRNA:   3'- uCGCCCG-UGGGCG----GC-UGGg--CUGGCCG- -5'
7266 3' -65.8 NC_001900.1 + 5723 0.68 0.16707
Target:  5'- cGGCGGGCuCaccaaccucgaugaCCGCCGACgCCGGuacaacCUGGCc -3'
miRNA:   3'- -UCGCCCGuG--------------GGCGGCUG-GGCU------GGCCG- -5'
7266 3' -65.8 NC_001900.1 + 1268 0.68 0.177109
Target:  5'- cGGCGGGU--UCGgUGGuuCGACCGGCa -3'
miRNA:   3'- -UCGCCCGugGGCgGCUggGCUGGCCG- -5'
7266 3' -65.8 NC_001900.1 + 16603 0.67 0.194385
Target:  5'- gAGCGGGagcugucgGCCgacguuccggucaaCGCCGACCUGAacgCGGCc -3'
miRNA:   3'- -UCGCCCg-------UGG--------------GCGGCUGGGCUg--GCCG- -5'
7266 3' -65.8 NC_001900.1 + 960 0.67 0.191007
Target:  5'- cGCGa-CugCUGCUGGCCuaCGGCCGGCu -3'
miRNA:   3'- uCGCccGugGGCGGCUGG--GCUGGCCG- -5'
7266 3' -65.8 NC_001900.1 + 1360 0.68 0.177109
Target:  5'- cGCuGGCGgUCGCCGcCCgCGACCaGCa -3'
miRNA:   3'- uCGcCCGUgGGCGGCuGG-GCUGGcCG- -5'
7266 3' -65.8 NC_001900.1 + 26232 0.76 0.045094
Target:  5'- uGauGGCACUCGCCGcagccuucuucucgcGCUCGGCCGGCg -3'
miRNA:   3'- uCgcCCGUGGGCGGC---------------UGGGCUGGCCG- -5'
7266 3' -65.8 NC_001900.1 + 3940 0.67 0.191007
Target:  5'- cGCcGGUACCCGCCuccacggcgaACgCGGCCGGUc -3'
miRNA:   3'- uCGcCCGUGGGCGGc---------UGgGCUGGCCG- -5'
7266 3' -65.8 NC_001900.1 + 27996 0.75 0.05397
Target:  5'- cGGCGGGCACgaagaucaCGCCGuuCgGGCCGGUg -3'
miRNA:   3'- -UCGCCCGUGg-------GCGGCugGgCUGGCCG- -5'
7266 3' -65.8 NC_001900.1 + 6498 0.68 0.17268
Target:  5'- cGGCGcGGUcCCCcaGCuCGGCCCG-CUGGCc -3'
miRNA:   3'- -UCGC-CCGuGGG--CG-GCUGGGCuGGCCG- -5'
7266 3' -65.8 NC_001900.1 + 25000 0.67 0.191007
Target:  5'- cAGUGGGUAUCa-CCGGuuUGGCCGGUg -3'
miRNA:   3'- -UCGCCCGUGGgcGGCUggGCUGGCCG- -5'
7266 3' -65.8 NC_001900.1 + 41743 0.67 0.195848
Target:  5'- cGGCGucggaGGUacACCCGaCCaaGCCCaGACCGGCg -3'
miRNA:   3'- -UCGC-----CCG--UGGGC-GGc-UGGG-CUGGCCG- -5'
7266 3' -65.8 NC_001900.1 + 10512 0.73 0.074635
Target:  5'- uGCuGGGCACgauggucgaCGCCGACCCGACggucccaGGCu -3'
miRNA:   3'- uCG-CCCGUGg--------GCGGCUGGGCUGg------CCG- -5'
7266 3' -65.8 NC_001900.1 + 13657 0.69 0.147748
Target:  5'- cAGCGGGCuccgaucaaguACCCGCCGGgguuucuCCUGG-CGGUc -3'
miRNA:   3'- -UCGCCCG-----------UGGGCGGCU-------GGGCUgGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.