miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7266 3' -65.8 NC_001900.1 + 3058 1.1 0.000078
Target:  5'- gAGCGGGCACCCGCCGACCCGACCGGCg -3'
miRNA:   3'- -UCGCCCGUGGGCGGCUGGGCUGGCCG- -5'
7266 3' -65.8 NC_001900.1 + 3122 0.81 0.016977
Target:  5'- cGGCGGGUGCCCGCUcgaucuccaggcgGACCCGucGCCGGUc -3'
miRNA:   3'- -UCGCCCGUGGGCGG-------------CUGGGC--UGGCCG- -5'
7266 3' -65.8 NC_001900.1 + 28100 0.77 0.036833
Target:  5'- uGGCGGcuccGCACCCGguuacaCCGGCCCGAaCGGCg -3'
miRNA:   3'- -UCGCC----CGUGGGC------GGCUGGGCUgGCCG- -5'
7266 3' -65.8 NC_001900.1 + 26232 0.76 0.045094
Target:  5'- uGauGGCACUCGCCGcagccuucuucucgcGCUCGGCCGGCg -3'
miRNA:   3'- uCgcCCGUGGGCGGC---------------UGGGCUGGCCG- -5'
7266 3' -65.8 NC_001900.1 + 27996 0.75 0.05397
Target:  5'- cGGCGGGCACgaagaucaCGCCGuuCgGGCCGGUg -3'
miRNA:   3'- -UCGCCCGUGg-------GCGGCugGgCUGGCCG- -5'
7266 3' -65.8 NC_001900.1 + 31693 0.73 0.074635
Target:  5'- cAGCuuGGCuCCgGUCGGCCCGAaCCGGCc -3'
miRNA:   3'- -UCGc-CCGuGGgCGGCUGGGCU-GGCCG- -5'
7266 3' -65.8 NC_001900.1 + 10512 0.73 0.074635
Target:  5'- uGCuGGGCACgauggucgaCGCCGACCCGACggucccaGGCu -3'
miRNA:   3'- uCG-CCCGUGg--------GCGGCUGGGCUGg------CCG- -5'
7266 3' -65.8 NC_001900.1 + 7880 0.72 0.080885
Target:  5'- uGCgGGGCgcgGCuuGCCGaucGCCUGACCGGUc -3'
miRNA:   3'- uCG-CCCG---UGggCGGC---UGGGCUGGCCG- -5'
7266 3' -65.8 NC_001900.1 + 9221 0.72 0.086243
Target:  5'- gAGCGGGCugucaucggacggccACCaC-CCGGCCCGugCGGg -3'
miRNA:   3'- -UCGCCCG---------------UGG-GcGGCUGGGCugGCCg -5'
7266 3' -65.8 NC_001900.1 + 29584 0.71 0.097212
Target:  5'- gAGCGguccaccGGCAgCCGCCGGCCC-AUCGGg -3'
miRNA:   3'- -UCGC-------CCGUgGGCGGCUGGGcUGGCCg -5'
7266 3' -65.8 NC_001900.1 + 12341 0.71 0.09747
Target:  5'- -cUGGGCACUcacguCGCCGACCCaGugCGGg -3'
miRNA:   3'- ucGCCCGUGG-----GCGGCUGGG-CugGCCg -5'
7266 3' -65.8 NC_001900.1 + 129 0.71 0.100087
Target:  5'- gGGCGaGGCGCUcuagCGUCGGCCCGugcuucugAUCGGCu -3'
miRNA:   3'- -UCGC-CCGUGG----GCGGCUGGGC--------UGGCCG- -5'
7266 3' -65.8 NC_001900.1 + 4118 0.71 0.11094
Target:  5'- cGCuGGCAguugguucaUCUGCCGACCggcgaagCGGCCGGCg -3'
miRNA:   3'- uCGcCCGU---------GGGCGGCUGG-------GCUGGCCG- -5'
7266 3' -65.8 NC_001900.1 + 38252 0.7 0.120344
Target:  5'- cAGcCGGGUugCCGcCCGugCC-ACCGGa -3'
miRNA:   3'- -UC-GCCCGugGGC-GGCugGGcUGGCCg -5'
7266 3' -65.8 NC_001900.1 + 35058 0.7 0.133573
Target:  5'- gGGCuGGGCAgCCGCCuuggucGACCUGAUCGa- -3'
miRNA:   3'- -UCG-CCCGUgGGCGG------CUGGGCUGGCcg -5'
7266 3' -65.8 NC_001900.1 + 36625 0.7 0.133573
Target:  5'- uGCGGGcCACCCGCaaaGCgaUGAUCGGCu -3'
miRNA:   3'- uCGCCC-GUGGGCGgc-UGg-GCUGGCCG- -5'
7266 3' -65.8 NC_001900.1 + 4002 0.7 0.133573
Target:  5'- aGGCGGGUACCgG-CGuCUCGGCCaGCu -3'
miRNA:   3'- -UCGCCCGUGGgCgGCuGGGCUGGcCG- -5'
7266 3' -65.8 NC_001900.1 + 11428 0.7 0.133573
Target:  5'- gAGCGGGC-CuuGCCagaugcaauGAgCUGGCUGGCu -3'
miRNA:   3'- -UCGCCCGuGggCGG---------CUgGGCUGGCCG- -5'
7266 3' -65.8 NC_001900.1 + 13731 0.69 0.140679
Target:  5'- cGGCGGGUacuugaucggaGCCCGCUGAacgUCG-CUGGCg -3'
miRNA:   3'- -UCGCCCG-----------UGGGCGGCUg--GGCuGGCCG- -5'
7266 3' -65.8 NC_001900.1 + 43885 0.69 0.142141
Target:  5'- aAGCGGcGUuccgguucGCUCGCgcucacagcgaggagCGGCCCGACCGGg -3'
miRNA:   3'- -UCGCC-CG--------UGGGCG---------------GCUGGGCUGGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.