miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7266 3' -65.8 NC_001900.1 + 16603 0.67 0.194385
Target:  5'- gAGCGGGagcugucgGCCgacguuccggucaaCGCCGACCUGAacgCGGCc -3'
miRNA:   3'- -UCGCCCg-------UGG--------------GCGGCUGGGCUg--GCCG- -5'
7266 3' -65.8 NC_001900.1 + 14460 0.68 0.177109
Target:  5'- cGCGGGCACCgacacgaaacCGCCuGACCCcgaauacauccuGACCcgagccgccaucGGCg -3'
miRNA:   3'- uCGCCCGUGG----------GCGG-CUGGG------------CUGG------------CCG- -5'
7266 3' -65.8 NC_001900.1 + 49046 0.66 0.256467
Target:  5'- aGGgGGGUuCCCcccaggggcGCCuuCCUGACCGGUc -3'
miRNA:   3'- -UCgCCCGuGGG---------CGGcuGGGCUGGCCG- -5'
7266 3' -65.8 NC_001900.1 + 25945 0.66 0.232812
Target:  5'- cAGCGGuGCcuUCUGCuCGAUCCGGCaCGGg -3'
miRNA:   3'- -UCGCC-CGu-GGGCG-GCUGGGCUG-GCCg -5'
7266 3' -65.8 NC_001900.1 + 27261 0.67 0.197815
Target:  5'- --aGGGguUuuGCCGaagcagcuugacugcGCCCGACCGGg -3'
miRNA:   3'- ucgCCCguGggCGGC---------------UGGGCUGGCCg -5'
7266 3' -65.8 NC_001900.1 + 1268 0.68 0.177109
Target:  5'- cGGCGGGU--UCGgUGGuuCGACCGGCa -3'
miRNA:   3'- -UCGCCCGugGGCgGCUggGCUGGCCG- -5'
7266 3' -65.8 NC_001900.1 + 17836 0.66 0.232812
Target:  5'- cGCuGGuCACCuCGCuCGGCCCGuACCuGCc -3'
miRNA:   3'- uCGcCC-GUGG-GCG-GCUGGGC-UGGcCG- -5'
7266 3' -65.8 NC_001900.1 + 1360 0.68 0.177109
Target:  5'- cGCuGGCGgUCGCCGcCCgCGACCaGCa -3'
miRNA:   3'- uCGcCCGUgGGCGGCuGG-GCUGGcCG- -5'
7266 3' -65.8 NC_001900.1 + 6498 0.68 0.17268
Target:  5'- cGGCGcGGUcCCCcaGCuCGGCCCG-CUGGCc -3'
miRNA:   3'- -UCGC-CCGuGGG--CG-GCUGGGCuGGCCG- -5'
7266 3' -65.8 NC_001900.1 + 1175 0.67 0.200797
Target:  5'- cGGCGGuGgAgCCGCCGGaagCGGCCGGg -3'
miRNA:   3'- -UCGCC-CgUgGGCGGCUgg-GCUGGCCg -5'
7266 3' -65.8 NC_001900.1 + 884 0.66 0.244402
Target:  5'- -aUGGGCAUCCGCuccuCGAaggUCGACCaGGCg -3'
miRNA:   3'- ucGCCCGUGGGCG----GCUg--GGCUGG-CCG- -5'
7266 3' -65.8 NC_001900.1 + 25000 0.67 0.191007
Target:  5'- cAGUGGGUAUCa-CCGGuuUGGCCGGUg -3'
miRNA:   3'- -UCGCCCGUGGgcGGCUggGCUGGCCG- -5'
7266 3' -65.8 NC_001900.1 + 960 0.67 0.191007
Target:  5'- cGCGa-CugCUGCUGGCCuaCGGCCGGCu -3'
miRNA:   3'- uCGCccGugGGCGGCUGG--GCUGGCCG- -5'
7266 3' -65.8 NC_001900.1 + 11860 0.67 0.200797
Target:  5'- uGCaGGGCGaggaCGCCGACUCGAUCGcCg -3'
miRNA:   3'- uCG-CCCGUgg--GCGGCUGGGCUGGCcG- -5'
7266 3' -65.8 NC_001900.1 + 19610 0.66 0.238548
Target:  5'- gGGCGGGCucaacCCCaCCGACCaguacaucgcacCGAaguggaccguucCCGGCu -3'
miRNA:   3'- -UCGCCCGu----GGGcGGCUGG------------GCU------------GGCCG- -5'
7266 3' -65.8 NC_001900.1 + 6267 0.66 0.256467
Target:  5'- cGCGGGCGCagCCGCgaacaucggCGACaUCGucGCUGGCg -3'
miRNA:   3'- uCGCCCGUG--GGCG---------GCUG-GGC--UGGCCG- -5'
7266 3' -65.8 NC_001900.1 + 25089 0.68 0.181639
Target:  5'- -aCGGGCACCgGgaccaCCGGCCaaACCGGUg -3'
miRNA:   3'- ucGCCCGUGGgC-----GGCUGGgcUGGCCG- -5'
7266 3' -65.8 NC_001900.1 + 31693 0.73 0.074635
Target:  5'- cAGCuuGGCuCCgGUCGGCCCGAaCCGGCc -3'
miRNA:   3'- -UCGc-CCGuGGgCGGCUGGGCU-GGCCG- -5'
7266 3' -65.8 NC_001900.1 + 9221 0.72 0.086243
Target:  5'- gAGCGGGCugucaucggacggccACCaC-CCGGCCCGugCGGg -3'
miRNA:   3'- -UCGCCCG---------------UGG-GcGGCUGGGCugGCCg -5'
7266 3' -65.8 NC_001900.1 + 7880 0.72 0.080885
Target:  5'- uGCgGGGCgcgGCuuGCCGaucGCCUGACCGGUc -3'
miRNA:   3'- uCG-CCCG---UGggCGGC---UGGGCUGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.