Results 1 - 20 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7268 | 3' | -54.1 | NC_001900.1 | + | 39130 | 0.66 | 0.746203 |
Target: 5'- cCACCGGCAUCgCgGAGgUcaUCCAGCg- -3' miRNA: 3'- aGUGGCUGUGG-GaCUUgA--AGGUCGag -5' |
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7268 | 3' | -54.1 | NC_001900.1 | + | 44356 | 0.66 | 0.735493 |
Target: 5'- -gACCGGgaACCaaccggGAgacgACUUCCAGCUCg -3' miRNA: 3'- agUGGCUg-UGGga----CU----UGAAGGUCGAG- -5' |
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7268 | 3' | -54.1 | NC_001900.1 | + | 32571 | 0.66 | 0.735493 |
Target: 5'- gUCACaGGCA-CCUGAGCUUCuCGGUg- -3' miRNA: 3'- -AGUGgCUGUgGGACUUGAAG-GUCGag -5' |
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7268 | 3' | -54.1 | NC_001900.1 | + | 43207 | 0.66 | 0.724674 |
Target: 5'- -aGgCGGCACCC-GAGCg--CAGCUCg -3' miRNA: 3'- agUgGCUGUGGGaCUUGaagGUCGAG- -5' |
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7268 | 3' | -54.1 | NC_001900.1 | + | 3818 | 0.66 | 0.724674 |
Target: 5'- gCGCCGcgagguCACCUUGAGCUggaAGUUCa -3' miRNA: 3'- aGUGGCu-----GUGGGACUUGAaggUCGAG- -5' |
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7268 | 3' | -54.1 | NC_001900.1 | + | 7262 | 0.66 | 0.713759 |
Target: 5'- aUCAUCGACGCCCUcacguuCUucgCCcGCUCu -3' miRNA: 3'- -AGUGGCUGUGGGAcuu---GAa--GGuCGAG- -5' |
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7268 | 3' | -54.1 | NC_001900.1 | + | 40408 | 0.66 | 0.713759 |
Target: 5'- cUCACCGAgaGCCCgugcagGAACa-CCAGCg- -3' miRNA: 3'- -AGUGGCUg-UGGGa-----CUUGaaGGUCGag -5' |
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7268 | 3' | -54.1 | NC_001900.1 | + | 17675 | 0.66 | 0.707169 |
Target: 5'- -gGCCGACACCCUcggcacgaugcugacGGGCgcUCUgcaGGCUCu -3' miRNA: 3'- agUGGCUGUGGGA---------------CUUGa-AGG---UCGAG- -5' |
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7268 | 3' | -54.1 | NC_001900.1 | + | 33748 | 0.67 | 0.691689 |
Target: 5'- -gGCCGACaacGCUgUGAGCUUCaCGGC-Ca -3' miRNA: 3'- agUGGCUG---UGGgACUUGAAG-GUCGaG- -5' |
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7268 | 3' | -54.1 | NC_001900.1 | + | 17187 | 0.67 | 0.690578 |
Target: 5'- uUCACCGACGuggugucgcagggUCCgGGGCU-CCAGCa- -3' miRNA: 3'- -AGUGGCUGU-------------GGGaCUUGAaGGUCGag -5' |
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7268 | 3' | -54.1 | NC_001900.1 | + | 8522 | 0.67 | 0.669378 |
Target: 5'- uUCGCCGACccggacaaguACCUcgacaagaUGGGCUUCgAGCUg -3' miRNA: 3'- -AGUGGCUG----------UGGG--------ACUUGAAGgUCGAg -5' |
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7268 | 3' | -54.1 | NC_001900.1 | + | 20459 | 0.67 | 0.658163 |
Target: 5'- --uCCuGCGCCCUGAGCUg-CAGUUCc -3' miRNA: 3'- aguGGcUGUGGGACUUGAagGUCGAG- -5' |
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7268 | 3' | -54.1 | NC_001900.1 | + | 24366 | 0.68 | 0.635666 |
Target: 5'- aCGCCaACACCCUGuACUUCaggaCGGCg- -3' miRNA: 3'- aGUGGcUGUGGGACuUGAAG----GUCGag -5' |
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7268 | 3' | -54.1 | NC_001900.1 | + | 44628 | 0.68 | 0.624407 |
Target: 5'- uUCACCGAggagACCCcGAACUUCgAGUg- -3' miRNA: 3'- -AGUGGCUg---UGGGaCUUGAAGgUCGag -5' |
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7268 | 3' | -54.1 | NC_001900.1 | + | 26594 | 0.68 | 0.624407 |
Target: 5'- aCGCCGACcCCCUu-ACUUCCaaacuAGCUa -3' miRNA: 3'- aGUGGCUGuGGGAcuUGAAGG-----UCGAg -5' |
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7268 | 3' | -54.1 | NC_001900.1 | + | 23269 | 0.68 | 0.601921 |
Target: 5'- aCACCGGCAUCgCUGGcggggaugACUUCgAGCg- -3' miRNA: 3'- aGUGGCUGUGG-GACU--------UGAAGgUCGag -5' |
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7268 | 3' | -54.1 | NC_001900.1 | + | 27032 | 0.68 | 0.590714 |
Target: 5'- -gACCGugGCCCUGAGCcgacaCGGUUg -3' miRNA: 3'- agUGGCugUGGGACUUGaag--GUCGAg -5' |
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7268 | 3' | -54.1 | NC_001900.1 | + | 23657 | 0.68 | 0.590714 |
Target: 5'- cUACCGGCguagagGCUCUGAccACUUCguCGGCUCg -3' miRNA: 3'- aGUGGCUG------UGGGACU--UGAAG--GUCGAG- -5' |
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7268 | 3' | -54.1 | NC_001900.1 | + | 40035 | 0.68 | 0.589594 |
Target: 5'- gUCGCCGACgaugucggucacgGCCUccccGAGCUUCuuggCAGCUCg -3' miRNA: 3'- -AGUGGCUG-------------UGGGa---CUUGAAG----GUCGAG- -5' |
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7268 | 3' | -54.1 | NC_001900.1 | + | 21618 | 0.68 | 0.579543 |
Target: 5'- cCGCgucaGACACCUUGAGCgugugagccgUUCgGGCUCg -3' miRNA: 3'- aGUGg---CUGUGGGACUUG----------AAGgUCGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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