miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7269 5' -56.6 NC_001900.1 + 13175 0.67 0.554042
Target:  5'- aUCGCGGcuggcgguuggaaGCGuCCUCGGAaGCCucgCACCa -3'
miRNA:   3'- -AGUGCC-------------CGU-GGAGCUUcCGGua-GUGG- -5'
7269 5' -56.6 NC_001900.1 + 14458 0.69 0.442135
Target:  5'- uUCGCGGGCACCgacaCGAAaccGCC-UgACCc -3'
miRNA:   3'- -AGUGCCCGUGGa---GCUUc--CGGuAgUGG- -5'
7269 5' -56.6 NC_001900.1 + 17095 0.66 0.631284
Target:  5'- gCGCGGGCAUCaUGGucucGGCUGcCGCCu -3'
miRNA:   3'- aGUGCCCGUGGaGCUu---CCGGUaGUGG- -5'
7269 5' -56.6 NC_001900.1 + 17835 0.69 0.432496
Target:  5'- aCGCuGGuCACCUCGcucGGCCcgUACCu -3'
miRNA:   3'- aGUGcCC-GUGGAGCuu-CCGGuaGUGG- -5'
7269 5' -56.6 NC_001900.1 + 18535 0.73 0.254845
Target:  5'- -gACGGGCuggaacccuuCCUCGAA-GCCGUUGCCg -3'
miRNA:   3'- agUGCCCGu---------GGAGCUUcCGGUAGUGG- -5'
7269 5' -56.6 NC_001900.1 + 18881 0.78 0.119923
Target:  5'- -gACGGuGCgAUCUCcAAGGCCAUCACCg -3'
miRNA:   3'- agUGCC-CG-UGGAGcUUCCGGUAGUGG- -5'
7269 5' -56.6 NC_001900.1 + 19472 0.66 0.595181
Target:  5'- aCGCGGGUcggucuucaucucgACCUUGggGGacucgaaCAgCGCCa -3'
miRNA:   3'- aGUGCCCG--------------UGGAGCuuCCg------GUaGUGG- -5'
7269 5' -56.6 NC_001900.1 + 20906 0.7 0.368641
Target:  5'- gCugGGGCACCgagaccgccuUCGgcGGCUccuggcUCACCg -3'
miRNA:   3'- aGugCCCGUGG----------AGCuuCCGGu-----AGUGG- -5'
7269 5' -56.6 NC_001900.1 + 21051 0.68 0.471756
Target:  5'- uUCcUGGGCACCagccCGAGGGCuCcgCACg -3'
miRNA:   3'- -AGuGCCCGUGGa---GCUUCCG-GuaGUGg -5'
7269 5' -56.6 NC_001900.1 + 21383 0.67 0.533778
Target:  5'- -gAUGGGUAUCUCGcuucccauugcGGGGCUugaggacaucGUCACCg -3'
miRNA:   3'- agUGCCCGUGGAGC-----------UUCCGG----------UAGUGG- -5'
7269 5' -56.6 NC_001900.1 + 23965 0.68 0.481852
Target:  5'- aCGCGGGUGaccgaaCUCGggGuGCCcUgGCCg -3'
miRNA:   3'- aGUGCCCGUg-----GAGCuuC-CGGuAgUGG- -5'
7269 5' -56.6 NC_001900.1 + 24747 0.71 0.327156
Target:  5'- cCACGGGaugucgacgccaCGCCU-GAGcguGGCCGUCACCc -3'
miRNA:   3'- aGUGCCC------------GUGGAgCUU---CCGGUAGUGG- -5'
7269 5' -56.6 NC_001900.1 + 24773 0.68 0.481852
Target:  5'- gCGCGGGCGgCaaaGggGGCgA-CACCa -3'
miRNA:   3'- aGUGCCCGUgGag-CuuCCGgUaGUGG- -5'
7269 5' -56.6 NC_001900.1 + 25091 0.71 0.327156
Target:  5'- cCACGGGCACCggGAccaccGGCCAa-ACCg -3'
miRNA:   3'- aGUGCCCGUGGagCUu----CCGGUagUGG- -5'
7269 5' -56.6 NC_001900.1 + 25382 0.78 0.116617
Target:  5'- gUCACGGGCugCU--GAGGCCAucugguacuucaUCGCCa -3'
miRNA:   3'- -AGUGCCCGugGAgcUUCCGGU------------AGUGG- -5'
7269 5' -56.6 NC_001900.1 + 27127 0.67 0.576694
Target:  5'- cUCACGGGCucAUCgCGAuGGUgAUCGCg -3'
miRNA:   3'- -AGUGCCCG--UGGaGCUuCCGgUAGUGg -5'
7269 5' -56.6 NC_001900.1 + 27465 0.72 0.303973
Target:  5'- cCugGGGCcgagccgcacgGCCUUGAGccGGCCGUCGgCg -3'
miRNA:   3'- aGugCCCG-----------UGGAGCUU--CCGGUAGUgG- -5'
7269 5' -56.6 NC_001900.1 + 32308 0.66 0.598454
Target:  5'- gUCACGGGCaaccACCgggcgUGgcGGUaCGUCAUCa -3'
miRNA:   3'- -AGUGCCCG----UGGa----GCuuCCG-GUAGUGG- -5'
7269 5' -56.6 NC_001900.1 + 33583 0.67 0.576694
Target:  5'- gUACGaGGCugCUgCGAucaaaGCCGUCGCUg -3'
miRNA:   3'- aGUGC-CCGugGA-GCUuc---CGGUAGUGG- -5'
7269 5' -56.6 NC_001900.1 + 33729 0.66 0.638955
Target:  5'- uUCACGgccaacgucgacccGGaCGCCUaCGAGGGCguggaUGUCGCCg -3'
miRNA:   3'- -AGUGC--------------CC-GUGGA-GCUUCCG-----GUAGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.