miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7269 5' -56.6 NC_001900.1 + 852 0.67 0.561566
Target:  5'- gUugGGaGCACCUCGAucccuugcgacuGCCAguacgCGCCg -3'
miRNA:   3'- aGugCC-CGUGGAGCUuc----------CGGUa----GUGG- -5'
7269 5' -56.6 NC_001900.1 + 883 0.71 0.351623
Target:  5'- -gAUGGGCAuccgcuCCUCGAAGGUCG--ACCa -3'
miRNA:   3'- agUGCCCGU------GGAGCUUCCGGUagUGG- -5'
7269 5' -56.6 NC_001900.1 + 2143 0.7 0.403416
Target:  5'- cUCGCGGucgaaacGCACC-CGAGGGCguuCGUgGCCg -3'
miRNA:   3'- -AGUGCC-------CGUGGaGCUUCCG---GUAgUGG- -5'
7269 5' -56.6 NC_001900.1 + 2331 0.7 0.395209
Target:  5'- gUCGCuG--ACCUCGAccuGGCCGUCACCc -3'
miRNA:   3'- -AGUGcCcgUGGAGCUu--CCGGUAGUGG- -5'
7269 5' -56.6 NC_001900.1 + 3121 0.69 0.422982
Target:  5'- -gGCGGGUGCCcgcUCGAucuccAGGCggaccCGUCGCCg -3'
miRNA:   3'- agUGCCCGUGG---AGCU-----UCCG-----GUAGUGG- -5'
7269 5' -56.6 NC_001900.1 + 3645 0.68 0.522167
Target:  5'- aCGCGGGgAacagCGAgaccggaugcaccAGGCCGUUACCg -3'
miRNA:   3'- aGUGCCCgUgga-GCU-------------UCCGGUAGUGG- -5'
7269 5' -56.6 NC_001900.1 + 3798 0.66 0.631284
Target:  5'- uUCGCGgucGGCgugACCUCGAcGGCgGUCAa- -3'
miRNA:   3'- -AGUGC---CCG---UGGAGCUuCCGgUAGUgg -5'
7269 5' -56.6 NC_001900.1 + 3975 1 0.00308
Target:  5'- cUCACGGGCACCUCGAA-GCCAUCACCg -3'
miRNA:   3'- -AGUGCCCGUGGAGCUUcCGGUAGUGG- -5'
7269 5' -56.6 NC_001900.1 + 4001 0.74 0.212425
Target:  5'- -gGCGGGUACCggCGucucGGCCAgcUCGCCg -3'
miRNA:   3'- agUGCCCGUGGa-GCuu--CCGGU--AGUGG- -5'
7269 5' -56.6 NC_001900.1 + 5394 0.68 0.471756
Target:  5'- --uCGGGUuggugcagucgGCCUgGAugAGGCCGUCACg -3'
miRNA:   3'- aguGCCCG-----------UGGAgCU--UCCGGUAGUGg -5'
7269 5' -56.6 NC_001900.1 + 5724 0.69 0.451893
Target:  5'- -gGCGGGCucaccaACCUCGAugaccGCCGaCGCCg -3'
miRNA:   3'- agUGCCCG------UGGAGCUuc---CGGUaGUGG- -5'
7269 5' -56.6 NC_001900.1 + 6191 0.67 0.544413
Target:  5'- cUCG-GGGUuggcuGCCUCGAucuGGGCCAgCACg -3'
miRNA:   3'- -AGUgCCCG-----UGGAGCU---UCCGGUaGUGg -5'
7269 5' -56.6 NC_001900.1 + 6266 0.66 0.620327
Target:  5'- aCGCGGGCGCagccgCGAAcaucGGCgacauCGUCGCUg -3'
miRNA:   3'- aGUGCCCGUGga---GCUU----CCG-----GUAGUGG- -5'
7269 5' -56.6 NC_001900.1 + 6631 0.68 0.522167
Target:  5'- gCACGGGCcaGCC-CGAuccccucGGGCC-UgGCCu -3'
miRNA:   3'- aGUGCCCG--UGGaGCU-------UCCGGuAgUGG- -5'
7269 5' -56.6 NC_001900.1 + 8146 0.69 0.422982
Target:  5'- aUCGCGuGGC-CUUCGuuGGCC-UUGCCg -3'
miRNA:   3'- -AGUGC-CCGuGGAGCuuCCGGuAGUGG- -5'
7269 5' -56.6 NC_001900.1 + 9220 0.74 0.235868
Target:  5'- -aGCGGGCugUcaUCGGAcGGCCAcCACCc -3'
miRNA:   3'- agUGCCCGugG--AGCUU-CCGGUaGUGG- -5'
7269 5' -56.6 NC_001900.1 + 9368 0.67 0.533778
Target:  5'- -gACGGGCACCgugacgcCGAuGGCCucugGUCGgCg -3'
miRNA:   3'- agUGCCCGUGGa------GCUuCCGG----UAGUgG- -5'
7269 5' -56.6 NC_001900.1 + 9532 0.66 0.598454
Target:  5'- -aGCGGG-GCCUCGAugucgAGGUUGuUCGCCu -3'
miRNA:   3'- agUGCCCgUGGAGCU-----UCCGGU-AGUGG- -5'
7269 5' -56.6 NC_001900.1 + 10416 0.69 0.442134
Target:  5'- uUCGCGGcGUACgUCGggGuGCUcggGUCACg -3'
miRNA:   3'- -AGUGCC-CGUGgAGCuuC-CGG---UAGUGg -5'
7269 5' -56.6 NC_001900.1 + 12532 0.69 0.455829
Target:  5'- aUCGCc-GCGCCgucgaacgccaucgCGAAGGCgGUCGCCa -3'
miRNA:   3'- -AGUGccCGUGGa-------------GCUUCCGgUAGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.