miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7269 5' -56.6 NC_001900.1 + 3975 1 0.00308
Target:  5'- cUCACGGGCACCUCGAA-GCCAUCACCg -3'
miRNA:   3'- -AGUGCCCGUGGAGCUUcCGGUAGUGG- -5'
7269 5' -56.6 NC_001900.1 + 13175 0.67 0.554042
Target:  5'- aUCGCGGcuggcgguuggaaGCGuCCUCGGAaGCCucgCACCa -3'
miRNA:   3'- -AGUGCC-------------CGU-GGAGCUUcCGGua-GUGG- -5'
7269 5' -56.6 NC_001900.1 + 27127 0.67 0.576694
Target:  5'- cUCACGGGCucAUCgCGAuGGUgAUCGCg -3'
miRNA:   3'- -AGUGCCCG--UGGaGCUuCCGgUAGUGg -5'
7269 5' -56.6 NC_001900.1 + 43599 0.66 0.642241
Target:  5'- aCGCGGuGCAUC-CGcAGGaCCGcCGCCg -3'
miRNA:   3'- aGUGCC-CGUGGaGCuUCC-GGUaGUGG- -5'
7269 5' -56.6 NC_001900.1 + 40010 0.71 0.319285
Target:  5'- cUCGCaGGUgcaugGCCUCGua-GCCGUCGCCg -3'
miRNA:   3'- -AGUGcCCG-----UGGAGCuucCGGUAGUGG- -5'
7269 5' -56.6 NC_001900.1 + 34413 0.71 0.335169
Target:  5'- aCACGGGUuggugcagacgACCUCGuuGGGC--UCACCg -3'
miRNA:   3'- aGUGCCCG-----------UGGAGCu-UCCGguAGUGG- -5'
7269 5' -56.6 NC_001900.1 + 20906 0.7 0.368641
Target:  5'- gCugGGGCACCgagaccgccuUCGgcGGCUccuggcUCACCg -3'
miRNA:   3'- aGugCCCGUGG----------AGCuuCCGGu-----AGUGG- -5'
7269 5' -56.6 NC_001900.1 + 2143 0.7 0.403416
Target:  5'- cUCGCGGucgaaacGCACC-CGAGGGCguuCGUgGCCg -3'
miRNA:   3'- -AGUGCC-------CGUGGaGCUUCCG---GUAgUGG- -5'
7269 5' -56.6 NC_001900.1 + 14458 0.69 0.442135
Target:  5'- uUCGCGGGCACCgacaCGAAaccGCC-UgACCc -3'
miRNA:   3'- -AGUGCCCGUGGa---GCUUc--CGGuAgUGG- -5'
7269 5' -56.6 NC_001900.1 + 21383 0.67 0.533778
Target:  5'- -gAUGGGUAUCUCGcuucccauugcGGGGCUugaggacaucGUCACCg -3'
miRNA:   3'- agUGCCCGUGGAGC-----------UUCCGG----------UAGUGG- -5'
7269 5' -56.6 NC_001900.1 + 21051 0.68 0.471756
Target:  5'- uUCcUGGGCACCagccCGAGGGCuCcgCACg -3'
miRNA:   3'- -AGuGCCCGUGGa---GCUUCCG-GuaGUGg -5'
7269 5' -56.6 NC_001900.1 + 17835 0.69 0.432496
Target:  5'- aCGCuGGuCACCUCGcucGGCCcgUACCu -3'
miRNA:   3'- aGUGcCC-GUGGAGCuu-CCGGuaGUGG- -5'
7269 5' -56.6 NC_001900.1 + 25382 0.78 0.116617
Target:  5'- gUCACGGGCugCU--GAGGCCAucugguacuucaUCGCCa -3'
miRNA:   3'- -AGUGCCCGugGAgcUUCCGGU------------AGUGG- -5'
7269 5' -56.6 NC_001900.1 + 24773 0.68 0.481852
Target:  5'- gCGCGGGCGgCaaaGggGGCgA-CACCa -3'
miRNA:   3'- aGUGCCCGUgGag-CuuCCGgUaGUGG- -5'
7269 5' -56.6 NC_001900.1 + 18881 0.78 0.119923
Target:  5'- -gACGGuGCgAUCUCcAAGGCCAUCACCg -3'
miRNA:   3'- agUGCC-CG-UGGAGcUUCCGGUAGUGG- -5'
7269 5' -56.6 NC_001900.1 + 34809 0.69 0.412662
Target:  5'- uUCGCGGGCACaccggcucaggauCUCGGAgaccucGGUCAgcaucuUCGCCa -3'
miRNA:   3'- -AGUGCCCGUG-------------GAGCUU------CCGGU------AGUGG- -5'
7269 5' -56.6 NC_001900.1 + 6631 0.68 0.522167
Target:  5'- gCACGGGCcaGCC-CGAuccccucGGGCC-UgGCCu -3'
miRNA:   3'- aGUGCCCG--UGGaGCU-------UCCGGuAgUGG- -5'
7269 5' -56.6 NC_001900.1 + 40276 0.67 0.555115
Target:  5'- aCGCGGGUcauguCCUCGAccguguGGCCgGUCGgCa -3'
miRNA:   3'- aGUGCCCGu----GGAGCUu-----CCGG-UAGUgG- -5'
7269 5' -56.6 NC_001900.1 + 27465 0.72 0.303973
Target:  5'- cCugGGGCcgagccgcacgGCCUUGAGccGGCCGUCGgCg -3'
miRNA:   3'- aGugCCCG-----------UGGAGCUU--CCGGUAGUgG- -5'
7269 5' -56.6 NC_001900.1 + 883 0.71 0.351623
Target:  5'- -gAUGGGCAuccgcuCCUCGAAGGUCG--ACCa -3'
miRNA:   3'- agUGCCCGU------GGAGCUUCCGGUagUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.