miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7269 5' -56.6 NC_001900.1 + 3975 1 0.00308
Target:  5'- cUCACGGGCACCUCGAA-GCCAUCACCg -3'
miRNA:   3'- -AGUGCCCGUGGAGCUUcCGGUAGUGG- -5'
7269 5' -56.6 NC_001900.1 + 25382 0.78 0.116617
Target:  5'- gUCACGGGCugCU--GAGGCCAucugguacuucaUCGCCa -3'
miRNA:   3'- -AGUGCCCGugGAgcUUCCGGU------------AGUGG- -5'
7269 5' -56.6 NC_001900.1 + 18881 0.78 0.119923
Target:  5'- -gACGGuGCgAUCUCcAAGGCCAUCACCg -3'
miRNA:   3'- agUGCC-CG-UGGAGcUUCCGGUAGUGG- -5'
7269 5' -56.6 NC_001900.1 + 4001 0.74 0.212425
Target:  5'- -gGCGGGUACCggCGucucGGCCAgcUCGCCg -3'
miRNA:   3'- agUGCCCGUGGa-GCuu--CCGGU--AGUGG- -5'
7269 5' -56.6 NC_001900.1 + 39313 0.74 0.218091
Target:  5'- -gACGGGCAUCguUCGAGGGCUGcUCugCa -3'
miRNA:   3'- agUGCCCGUGG--AGCUUCCGGU-AGugG- -5'
7269 5' -56.6 NC_001900.1 + 9220 0.74 0.235868
Target:  5'- -aGCGGGCugUcaUCGGAcGGCCAcCACCc -3'
miRNA:   3'- agUGCCCGugG--AGCUU-CCGGUaGUGG- -5'
7269 5' -56.6 NC_001900.1 + 18535 0.73 0.254845
Target:  5'- -gACGGGCuggaacccuuCCUCGAA-GCCGUUGCCg -3'
miRNA:   3'- agUGCCCGu---------GGAGCUUcCGGUAGUGG- -5'
7269 5' -56.6 NC_001900.1 + 27465 0.72 0.303973
Target:  5'- cCugGGGCcgagccgcacgGCCUUGAGccGGCCGUCGgCg -3'
miRNA:   3'- aGugCCCG-----------UGGAGCUU--CCGGUAGUgG- -5'
7269 5' -56.6 NC_001900.1 + 40010 0.71 0.319285
Target:  5'- cUCGCaGGUgcaugGCCUCGua-GCCGUCGCCg -3'
miRNA:   3'- -AGUGcCCG-----UGGAGCuucCGGUAGUGG- -5'
7269 5' -56.6 NC_001900.1 + 24747 0.71 0.327156
Target:  5'- cCACGGGaugucgacgccaCGCCU-GAGcguGGCCGUCACCc -3'
miRNA:   3'- aGUGCCC------------GUGGAgCUU---CCGGUAGUGG- -5'
7269 5' -56.6 NC_001900.1 + 25091 0.71 0.327156
Target:  5'- cCACGGGCACCggGAccaccGGCCAa-ACCg -3'
miRNA:   3'- aGUGCCCGUGGagCUu----CCGGUagUGG- -5'
7269 5' -56.6 NC_001900.1 + 34413 0.71 0.335169
Target:  5'- aCACGGGUuggugcagacgACCUCGuuGGGC--UCACCg -3'
miRNA:   3'- aGUGCCCG-----------UGGAGCu-UCCGguAGUGG- -5'
7269 5' -56.6 NC_001900.1 + 34255 0.71 0.351623
Target:  5'- --uUGGGCACCUCGGAguGGCCuccuauuUgGCCc -3'
miRNA:   3'- aguGCCCGUGGAGCUU--CCGGu------AgUGG- -5'
7269 5' -56.6 NC_001900.1 + 883 0.71 0.351623
Target:  5'- -gAUGGGCAuccgcuCCUCGAAGGUCG--ACCa -3'
miRNA:   3'- agUGCCCGU------GGAGCUUCCGGUagUGG- -5'
7269 5' -56.6 NC_001900.1 + 20906 0.7 0.368641
Target:  5'- gCugGGGCACCgagaccgccuUCGgcGGCUccuggcUCACCg -3'
miRNA:   3'- aGugCCCGUGG----------AGCuuCCGGu-----AGUGG- -5'
7269 5' -56.6 NC_001900.1 + 49055 0.7 0.37736
Target:  5'- cUCACGGcacgcGUGCCUCGAGGGgCA-CACg -3'
miRNA:   3'- -AGUGCC-----CGUGGAGCUUCCgGUaGUGg -5'
7269 5' -56.6 NC_001900.1 + 2331 0.7 0.395209
Target:  5'- gUCGCuG--ACCUCGAccuGGCCGUCACCc -3'
miRNA:   3'- -AGUGcCcgUGGAGCUu--CCGGUAGUGG- -5'
7269 5' -56.6 NC_001900.1 + 2143 0.7 0.403416
Target:  5'- cUCGCGGucgaaacGCACC-CGAGGGCguuCGUgGCCg -3'
miRNA:   3'- -AGUGCC-------CGUGGaGCUUCCG---GUAgUGG- -5'
7269 5' -56.6 NC_001900.1 + 34809 0.69 0.412662
Target:  5'- uUCGCGGGCACaccggcucaggauCUCGGAgaccucGGUCAgcaucuUCGCCa -3'
miRNA:   3'- -AGUGCCCGUG-------------GAGCUU------CCGGU------AGUGG- -5'
7269 5' -56.6 NC_001900.1 + 46659 0.69 0.413594
Target:  5'- -gACGGGCugACCUuccgUGAGGcugcccaccaaGCCAUCGCCa -3'
miRNA:   3'- agUGCCCG--UGGA----GCUUC-----------CGGUAGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.