miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7269 5' -56.6 NC_001900.1 + 3798 0.66 0.631284
Target:  5'- uUCGCGgucGGCgugACCUCGAcGGCgGUCAa- -3'
miRNA:   3'- -AGUGC---CCG---UGGAGCUuCCGgUAGUgg -5'
7269 5' -56.6 NC_001900.1 + 27127 0.67 0.576694
Target:  5'- cUCACGGGCucAUCgCGAuGGUgAUCGCg -3'
miRNA:   3'- -AGUGCCCG--UGGaGCUuCCGgUAGUGg -5'
7269 5' -56.6 NC_001900.1 + 17835 0.69 0.432496
Target:  5'- aCGCuGGuCACCUCGcucGGCCcgUACCu -3'
miRNA:   3'- aGUGcCC-GUGGAGCuu-CCGGuaGUGG- -5'
7269 5' -56.6 NC_001900.1 + 34809 0.69 0.412662
Target:  5'- uUCGCGGGCACaccggcucaggauCUCGGAgaccucGGUCAgcaucuUCGCCa -3'
miRNA:   3'- -AGUGCCCGUG-------------GAGCUU------CCGGU------AGUGG- -5'
7269 5' -56.6 NC_001900.1 + 2143 0.7 0.403416
Target:  5'- cUCGCGGucgaaacGCACC-CGAGGGCguuCGUgGCCg -3'
miRNA:   3'- -AGUGCC-------CGUGGaGCUUCCG---GUAgUGG- -5'
7269 5' -56.6 NC_001900.1 + 19472 0.66 0.595181
Target:  5'- aCGCGGGUcggucuucaucucgACCUUGggGGacucgaaCAgCGCCa -3'
miRNA:   3'- aGUGCCCG--------------UGGAGCuuCCg------GUaGUGG- -5'
7269 5' -56.6 NC_001900.1 + 47333 0.66 0.620327
Target:  5'- aCGCGGGCaaGCUggaGAAGGUCcgCaaaGCCg -3'
miRNA:   3'- aGUGCCCG--UGGag-CUUCCGGuaG---UGG- -5'
7269 5' -56.6 NC_001900.1 + 18535 0.73 0.254845
Target:  5'- -gACGGGCuggaacccuuCCUCGAA-GCCGUUGCCg -3'
miRNA:   3'- agUGCCCGu---------GGAGCUUcCGGUAGUGG- -5'
7269 5' -56.6 NC_001900.1 + 24747 0.71 0.327156
Target:  5'- cCACGGGaugucgacgccaCGCCU-GAGcguGGCCGUCACCc -3'
miRNA:   3'- aGUGCCC------------GUGGAgCUU---CCGGUAGUGG- -5'
7269 5' -56.6 NC_001900.1 + 25091 0.71 0.327156
Target:  5'- cCACGGGCACCggGAccaccGGCCAa-ACCg -3'
miRNA:   3'- aGUGCCCGUGGagCUu----CCGGUagUGG- -5'
7269 5' -56.6 NC_001900.1 + 9368 0.67 0.533778
Target:  5'- -gACGGGCACCgugacgcCGAuGGCCucugGUCGgCg -3'
miRNA:   3'- agUGCCCGUGGa------GCUuCCGG----UAGUgG- -5'
7269 5' -56.6 NC_001900.1 + 43047 0.67 0.544413
Target:  5'- cCGCGaGGCuucgcgucccCCUCGAcggAGGCgGUCACa -3'
miRNA:   3'- aGUGC-CCGu---------GGAGCU---UCCGgUAGUGg -5'
7269 5' -56.6 NC_001900.1 + 6191 0.67 0.544413
Target:  5'- cUCG-GGGUuggcuGCCUCGAucuGGGCCAgCACg -3'
miRNA:   3'- -AGUgCCCG-----UGGAGCU---UCCGGUaGUGg -5'
7269 5' -56.6 NC_001900.1 + 40779 0.67 0.555115
Target:  5'- cUugGGggauGCGCCagGAAGGCUucaacGUCACCc -3'
miRNA:   3'- aGugCC----CGUGGagCUUCCGG-----UAGUGG- -5'
7269 5' -56.6 NC_001900.1 + 32308 0.66 0.598454
Target:  5'- gUCACGGGCaaccACCgggcgUGgcGGUaCGUCAUCa -3'
miRNA:   3'- -AGUGCCCG----UGGa----GCuuCCG-GUAGUGG- -5'
7269 5' -56.6 NC_001900.1 + 3121 0.69 0.422982
Target:  5'- -gGCGGGUGCCcgcUCGAucuccAGGCggaccCGUCGCCg -3'
miRNA:   3'- agUGCCCGUGG---AGCU-----UCCG-----GUAGUGG- -5'
7269 5' -56.6 NC_001900.1 + 46659 0.69 0.413594
Target:  5'- -gACGGGCugACCUuccgUGAGGcugcccaccaaGCCAUCGCCa -3'
miRNA:   3'- agUGCCCG--UGGA----GCUUC-----------CGGUAGUGG- -5'
7269 5' -56.6 NC_001900.1 + 2331 0.7 0.395209
Target:  5'- gUCGCuG--ACCUCGAccuGGCCGUCACCc -3'
miRNA:   3'- -AGUGcCcgUGGAGCUu--CCGGUAGUGG- -5'
7269 5' -56.6 NC_001900.1 + 49055 0.7 0.37736
Target:  5'- cUCACGGcacgcGUGCCUCGAGGGgCA-CACg -3'
miRNA:   3'- -AGUGCC-----CGUGGAGCUUCCgGUaGUGg -5'
7269 5' -56.6 NC_001900.1 + 34255 0.71 0.351623
Target:  5'- --uUGGGCACCUCGGAguGGCCuccuauuUgGCCc -3'
miRNA:   3'- aguGCCCGUGGAGCUU--CCGGu------AgUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.