miRNA display CGI


Results 21 - 40 of 42 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7272 5' -57.2 NC_001900.1 + 24579 0.69 0.420973
Target:  5'- gACCGCCGUGACCggagucagcaccgggUCGAAcGCuGGcCACa -3'
miRNA:   3'- -UGGCGGCGCUGG---------------AGCUU-UG-CCaGUGc -5'
7272 5' -57.2 NC_001900.1 + 25667 0.77 0.141376
Target:  5'- cAUCGCCGCGACg-UGAGGCGG-CACGg -3'
miRNA:   3'- -UGGCGGCGCUGgaGCUUUGCCaGUGC- -5'
7272 5' -57.2 NC_001900.1 + 26254 0.69 0.426579
Target:  5'- gAUCGCCGagcgaGACCUCGcuGGCGG-CACc -3'
miRNA:   3'- -UGGCGGCg----CUGGAGCu-UUGCCaGUGc -5'
7272 5' -57.2 NC_001900.1 + 26480 0.67 0.568088
Target:  5'- gAUCGCUGCgGACCcagCGcAGCGGUCGa- -3'
miRNA:   3'- -UGGCGGCG-CUGGa--GCuUUGCCAGUgc -5'
7272 5' -57.2 NC_001900.1 + 26943 0.69 0.426579
Target:  5'- gGCCGuuGCGACCUUaaguGCGaccuuGUCACGu -3'
miRNA:   3'- -UGGCggCGCUGGAGcuu-UGC-----CAGUGC- -5'
7272 5' -57.2 NC_001900.1 + 27600 0.66 0.578779
Target:  5'- gACCGCCGacuuCCUCGGcgugagcaccaaGACGGUgCGCc -3'
miRNA:   3'- -UGGCGGCgcu-GGAGCU------------UUGCCA-GUGc -5'
7272 5' -57.2 NC_001900.1 + 30293 0.67 0.568088
Target:  5'- cGCCuCCGCGACaUCcu--CGGUCGCGu -3'
miRNA:   3'- -UGGcGGCGCUGgAGcuuuGCCAGUGC- -5'
7272 5' -57.2 NC_001900.1 + 31750 0.68 0.505246
Target:  5'- gACCGCaGUGACCaaccgaccguUCGcgGCGGUCAgGu -3'
miRNA:   3'- -UGGCGgCGCUGG----------AGCuuUGCCAGUgC- -5'
7272 5' -57.2 NC_001900.1 + 31831 0.72 0.293444
Target:  5'- gACCGCCGCGAacggUCGGu-UGGUCACu -3'
miRNA:   3'- -UGGCGGCGCUgg--AGCUuuGCCAGUGc -5'
7272 5' -57.2 NC_001900.1 + 31906 0.66 0.632706
Target:  5'- aACCGCuCG-GucuCCUCG--GCGGUCAUGu -3'
miRNA:   3'- -UGGCG-GCgCu--GGAGCuuUGCCAGUGC- -5'
7272 5' -57.2 NC_001900.1 + 32540 0.66 0.632706
Target:  5'- gACCGaCCGgcUGGCCUCGAuguagAAC-GUCGCGc -3'
miRNA:   3'- -UGGC-GGC--GCUGGAGCU-----UUGcCAGUGC- -5'
7272 5' -57.2 NC_001900.1 + 33311 0.66 0.611074
Target:  5'- cGCagGCCGC-ACCUCc--ACGGUCugGg -3'
miRNA:   3'- -UGg-CGGCGcUGGAGcuuUGCCAGugC- -5'
7272 5' -57.2 NC_001900.1 + 36703 0.66 0.578779
Target:  5'- uCCGCCGCGACCgugCGuucuuguGCaGG-UACGg -3'
miRNA:   3'- uGGCGGCGCUGGa--GCuu-----UG-CCaGUGC- -5'
7272 5' -57.2 NC_001900.1 + 36789 0.69 0.445582
Target:  5'- aGCUGCCGU-ACCUgcacaaGAAcgcACGGUCGCGg -3'
miRNA:   3'- -UGGCGGCGcUGGAg-----CUU---UGCCAGUGC- -5'
7272 5' -57.2 NC_001900.1 + 40031 0.7 0.381258
Target:  5'- aGCCGUCGcCGACgaUGu--CGGUCACGg -3'
miRNA:   3'- -UGGCGGC-GCUGgaGCuuuGCCAGUGC- -5'
7272 5' -57.2 NC_001900.1 + 40158 0.68 0.465049
Target:  5'- cGCUGCCGCGACUcugugCGGguGACGcGcCGCGa -3'
miRNA:   3'- -UGGCGGCGCUGGa----GCU--UUGC-CaGUGC- -5'
7272 5' -57.2 NC_001900.1 + 40316 0.69 0.445582
Target:  5'- aGCCGCUGCGGCCgUGGu-UGGcCGCGu -3'
miRNA:   3'- -UGGCGGCGCUGGaGCUuuGCCaGUGC- -5'
7272 5' -57.2 NC_001900.1 + 41401 0.69 0.445582
Target:  5'- aACCGCCcUGGCUUaaaCGAcaAACGGUCAUGu -3'
miRNA:   3'- -UGGCGGcGCUGGA---GCU--UUGCCAGUGC- -5'
7272 5' -57.2 NC_001900.1 + 43052 0.78 0.113176
Target:  5'- gACgGCCGCGAggcuucgcgucccCCUCGAcggaGGCGGUCACa -3'
miRNA:   3'- -UGgCGGCGCU-------------GGAGCU----UUGCCAGUGc -5'
7272 5' -57.2 NC_001900.1 + 44668 0.66 0.621886
Target:  5'- gACCGCCucgGCGACagcgUGGAacGCGGUCcccuGCGg -3'
miRNA:   3'- -UGGCGG---CGCUGga--GCUU--UGCCAG----UGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.