miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7272 5' -57.2 NC_001900.1 + 1184 0.66 0.611074
Target:  5'- aGCCGCCggaaGCGGCC--GggGCGGUUuagGCa -3'
miRNA:   3'- -UGGCGG----CGCUGGagCuuUGCCAG---UGc -5'
7272 5' -57.2 NC_001900.1 + 2336 0.69 0.455259
Target:  5'- uGCuCGUCGCuGACCUCGAccuGGCcGUCACc -3'
miRNA:   3'- -UG-GCGGCG-CUGGAGCU---UUGcCAGUGc -5'
7272 5' -57.2 NC_001900.1 + 3284 0.66 0.597046
Target:  5'- cACCgGCCGCGACUuccgcuggUCGAucccccaccucgaccCGGUCACc -3'
miRNA:   3'- -UGG-CGGCGCUGG--------AGCUuu-------------GCCAGUGc -5'
7272 5' -57.2 NC_001900.1 + 3536 0.66 0.589512
Target:  5'- cAUCGaCGCGGCgCUCGggGcCGGUaACGg -3'
miRNA:   3'- -UGGCgGCGCUG-GAGCuuU-GCCAgUGC- -5'
7272 5' -57.2 NC_001900.1 + 3804 0.75 0.189952
Target:  5'- gUCGgCGUGACCUCGAcGGCGGUCAa- -3'
miRNA:   3'- uGGCgGCGCUGGAGCU-UUGCCAGUgc -5'
7272 5' -57.2 NC_001900.1 + 4151 0.67 0.5353
Target:  5'- cUUGUCGgccucuucggacuCGACCuugaUCGAGGCGGUCACGc -3'
miRNA:   3'- uGGCGGC-------------GCUGG----AGCUUUGCCAGUGC- -5'
7272 5' -57.2 NC_001900.1 + 5685 1.08 0.00086
Target:  5'- gACCGCCGCGACCUCGAAACGGUCACGc -3'
miRNA:   3'- -UGGCGGCGCUGGAGCUUUGCCAGUGC- -5'
7272 5' -57.2 NC_001900.1 + 5777 0.68 0.473952
Target:  5'- cCCGCCGUugauccggcgcguGACCguuUCGAGgucgcgGCGGUCGCu -3'
miRNA:   3'- uGGCGGCG-------------CUGG---AGCUU------UGCCAGUGc -5'
7272 5' -57.2 NC_001900.1 + 6726 0.68 0.505246
Target:  5'- cCCGCUGCGGCCUuccCGAuguggccguCGGUCGa- -3'
miRNA:   3'- uGGCGGCGCUGGA---GCUuu-------GCCAGUgc -5'
7272 5' -57.2 NC_001900.1 + 7904 0.66 0.60028
Target:  5'- gACgGCCGCGACggUGAuccacgcuGCGGggCGCGg -3'
miRNA:   3'- -UGgCGGCGCUGgaGCUu-------UGCCa-GUGC- -5'
7272 5' -57.2 NC_001900.1 + 12425 0.68 0.495051
Target:  5'- gAUCGUCGCGAUCUUGuggggcgcGAUGGUCuGCGa -3'
miRNA:   3'- -UGGCGGCGCUGGAGCu-------UUGCCAG-UGC- -5'
7272 5' -57.2 NC_001900.1 + 12533 0.74 0.227459
Target:  5'- cAUCGCCGCG-CCgUCGAAcgccaucgcgaagGCGGUCGCc -3'
miRNA:   3'- -UGGCGGCGCuGG-AGCUU-------------UGCCAGUGc -5'
7272 5' -57.2 NC_001900.1 + 13077 0.69 0.445582
Target:  5'- cGCCGCCGCuGACCaCGu--UGGUCAg- -3'
miRNA:   3'- -UGGCGGCG-CUGGaGCuuuGCCAGUgc -5'
7272 5' -57.2 NC_001900.1 + 13677 0.7 0.381258
Target:  5'- cCCGCCGgGGuuUCUCcuGGCGGUCACa -3'
miRNA:   3'- uGGCGGCgCU--GGAGcuUUGCCAGUGc -5'
7272 5' -57.2 NC_001900.1 + 13719 0.68 0.505246
Target:  5'- cGCCGCgaugUGCGACCaCGAAGCGGaUCcucCGg -3'
miRNA:   3'- -UGGCG----GCGCUGGaGCUUUGCC-AGu--GC- -5'
7272 5' -57.2 NC_001900.1 + 14291 0.73 0.265668
Target:  5'- uGCCugGCCGCGACCUUGuucGCGuUCGCGu -3'
miRNA:   3'- -UGG--CGGCGCUGGAGCuu-UGCcAGUGC- -5'
7272 5' -57.2 NC_001900.1 + 20159 0.7 0.372587
Target:  5'- uCCGUcugCGCGGCCUCGucGCGGgugaGCGa -3'
miRNA:   3'- uGGCG---GCGCUGGAGCuuUGCCag--UGC- -5'
7272 5' -57.2 NC_001900.1 + 21249 0.67 0.568088
Target:  5'- aGCCaGCuCGcCGugCUCGgcGCGGUCGg- -3'
miRNA:   3'- -UGG-CG-GC-GCugGAGCuuUGCCAGUgc -5'
7272 5' -57.2 NC_001900.1 + 22155 0.68 0.505247
Target:  5'- -gUGCCGCuGGCCUCGGAAggcCGG-CugGa -3'
miRNA:   3'- ugGCGGCG-CUGGAGCUUU---GCCaGugC- -5'
7272 5' -57.2 NC_001900.1 + 22660 0.72 0.293444
Target:  5'- cACCGCCGcCGAUCUCGAAuGCGccGUCAg- -3'
miRNA:   3'- -UGGCGGC-GCUGGAGCUU-UGC--CAGUgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.