miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7272 5' -57.2 NC_001900.1 + 5685 1.08 0.00086
Target:  5'- gACCGCCGCGACCUCGAAACGGUCACGc -3'
miRNA:   3'- -UGGCGGCGCUGGAGCUUUGCCAGUGC- -5'
7272 5' -57.2 NC_001900.1 + 43052 0.78 0.113176
Target:  5'- gACgGCCGCGAggcuucgcgucccCCUCGAcggaGGCGGUCACa -3'
miRNA:   3'- -UGgCGGCGCU-------------GGAGCU----UUGCCAGUGc -5'
7272 5' -57.2 NC_001900.1 + 25667 0.77 0.141376
Target:  5'- cAUCGCCGCGACg-UGAGGCGG-CACGg -3'
miRNA:   3'- -UGGCGGCGCUGgaGCUUUGCCaGUGC- -5'
7272 5' -57.2 NC_001900.1 + 3804 0.75 0.189952
Target:  5'- gUCGgCGUGACCUCGAcGGCGGUCAa- -3'
miRNA:   3'- uGGCgGCGCUGGAGCU-UUGCCAGUgc -5'
7272 5' -57.2 NC_001900.1 + 12533 0.74 0.227459
Target:  5'- cAUCGCCGCG-CCgUCGAAcgccaucgcgaagGCGGUCGCc -3'
miRNA:   3'- -UGGCGGCGCuGG-AGCUU-------------UGCCAGUGc -5'
7272 5' -57.2 NC_001900.1 + 14291 0.73 0.265668
Target:  5'- uGCCugGCCGCGACCUUGuucGCGuUCGCGu -3'
miRNA:   3'- -UGG--CGGCGCUGGAGCuu-UGCcAGUGC- -5'
7272 5' -57.2 NC_001900.1 + 31831 0.72 0.293444
Target:  5'- gACCGCCGCGAacggUCGGu-UGGUCACu -3'
miRNA:   3'- -UGGCGGCGCUgg--AGCUuuGCCAGUGc -5'
7272 5' -57.2 NC_001900.1 + 22660 0.72 0.293444
Target:  5'- cACCGCCGcCGAUCUCGAAuGCGccGUCAg- -3'
miRNA:   3'- -UGGCGGC-GCUGGAGCUU-UGC--CAGUgc -5'
7272 5' -57.2 NC_001900.1 + 20159 0.7 0.372587
Target:  5'- uCCGUcugCGCGGCCUCGucGCGGgugaGCGa -3'
miRNA:   3'- uGGCG---GCGCUGGAGCuuUGCCag--UGC- -5'
7272 5' -57.2 NC_001900.1 + 13677 0.7 0.381258
Target:  5'- cCCGCCGgGGuuUCUCcuGGCGGUCACa -3'
miRNA:   3'- uGGCGGCgCU--GGAGcuUUGCCAGUGc -5'
7272 5' -57.2 NC_001900.1 + 40031 0.7 0.381258
Target:  5'- aGCCGUCGcCGACgaUGu--CGGUCACGg -3'
miRNA:   3'- -UGGCGGC-GCUGgaGCuuuGCCAGUGC- -5'
7272 5' -57.2 NC_001900.1 + 24579 0.69 0.420973
Target:  5'- gACCGCCGUGACCggagucagcaccgggUCGAAcGCuGGcCACa -3'
miRNA:   3'- -UGGCGGCGCUGG---------------AGCUU-UG-CCaGUGc -5'
7272 5' -57.2 NC_001900.1 + 26943 0.69 0.426579
Target:  5'- gGCCGuuGCGACCUUaaguGCGaccuuGUCACGu -3'
miRNA:   3'- -UGGCggCGCUGGAGcuu-UGC-----CAGUGC- -5'
7272 5' -57.2 NC_001900.1 + 26254 0.69 0.426579
Target:  5'- gAUCGCCGagcgaGACCUCGcuGGCGG-CACc -3'
miRNA:   3'- -UGGCGGCg----CUGGAGCu-UUGCCaGUGc -5'
7272 5' -57.2 NC_001900.1 + 40316 0.69 0.445582
Target:  5'- aGCCGCUGCGGCCgUGGu-UGGcCGCGu -3'
miRNA:   3'- -UGGCGGCGCUGGaGCUuuGCCaGUGC- -5'
7272 5' -57.2 NC_001900.1 + 36789 0.69 0.445582
Target:  5'- aGCUGCCGU-ACCUgcacaaGAAcgcACGGUCGCGg -3'
miRNA:   3'- -UGGCGGCGcUGGAg-----CUU---UGCCAGUGC- -5'
7272 5' -57.2 NC_001900.1 + 13077 0.69 0.445582
Target:  5'- cGCCGCCGCuGACCaCGu--UGGUCAg- -3'
miRNA:   3'- -UGGCGGCG-CUGGaGCuuuGCCAGUgc -5'
7272 5' -57.2 NC_001900.1 + 46157 0.69 0.445582
Target:  5'- gGCCGuuGCGcgaagcggcaGCUUCGAggUGGUCGa- -3'
miRNA:   3'- -UGGCggCGC----------UGGAGCUuuGCCAGUgc -5'
7272 5' -57.2 NC_001900.1 + 41401 0.69 0.445582
Target:  5'- aACCGCCcUGGCUUaaaCGAcaAACGGUCAUGu -3'
miRNA:   3'- -UGGCGGcGCUGGA---GCU--UUGCCAGUGC- -5'
7272 5' -57.2 NC_001900.1 + 2336 0.69 0.455259
Target:  5'- uGCuCGUCGCuGACCUCGAccuGGCcGUCACc -3'
miRNA:   3'- -UG-GCGGCG-CUGGAGCU---UUGcCAGUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.