miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7272 5' -57.2 NC_001900.1 + 3804 0.75 0.189952
Target:  5'- gUCGgCGUGACCUCGAcGGCGGUCAa- -3'
miRNA:   3'- uGGCgGCGCUGGAGCU-UUGCCAGUgc -5'
7272 5' -57.2 NC_001900.1 + 3284 0.66 0.597046
Target:  5'- cACCgGCCGCGACUuccgcuggUCGAucccccaccucgaccCGGUCACc -3'
miRNA:   3'- -UGG-CGGCGCUGG--------AGCUuu-------------GCCAGUGc -5'
7272 5' -57.2 NC_001900.1 + 33311 0.66 0.611074
Target:  5'- cGCagGCCGC-ACCUCc--ACGGUCugGg -3'
miRNA:   3'- -UGg-CGGCGcUGGAGcuuUGCCAGugC- -5'
7272 5' -57.2 NC_001900.1 + 31906 0.66 0.632706
Target:  5'- aACCGCuCG-GucuCCUCG--GCGGUCAUGu -3'
miRNA:   3'- -UGGCG-GCgCu--GGAGCuuUGCCAGUGC- -5'
7272 5' -57.2 NC_001900.1 + 40316 0.69 0.445582
Target:  5'- aGCCGCUGCGGCCgUGGu-UGGcCGCGu -3'
miRNA:   3'- -UGGCGGCGCUGGaGCUuuGCCaGUGC- -5'
7272 5' -57.2 NC_001900.1 + 46157 0.69 0.445582
Target:  5'- gGCCGuuGCGcgaagcggcaGCUUCGAggUGGUCGa- -3'
miRNA:   3'- -UGGCggCGC----------UGGAGCUuuGCCAGUgc -5'
7272 5' -57.2 NC_001900.1 + 6726 0.68 0.505246
Target:  5'- cCCGCUGCGGCCUuccCGAuguggccguCGGUCGa- -3'
miRNA:   3'- uGGCGGCGCUGGA---GCUuu-------GCCAGUgc -5'
7272 5' -57.2 NC_001900.1 + 31750 0.68 0.505246
Target:  5'- gACCGCaGUGACCaaccgaccguUCGcgGCGGUCAgGu -3'
miRNA:   3'- -UGGCGgCGCUGG----------AGCuuUGCCAGUgC- -5'
7272 5' -57.2 NC_001900.1 + 5685 1.08 0.00086
Target:  5'- gACCGCCGCGACCUCGAAACGGUCACGc -3'
miRNA:   3'- -UGGCGGCGCUGGAGCUUUGCCAGUGC- -5'
7272 5' -57.2 NC_001900.1 + 3536 0.66 0.589512
Target:  5'- cAUCGaCGCGGCgCUCGggGcCGGUaACGg -3'
miRNA:   3'- -UGGCgGCGCUG-GAGCuuU-GCCAgUGC- -5'
7272 5' -57.2 NC_001900.1 + 21249 0.67 0.568088
Target:  5'- aGCCaGCuCGcCGugCUCGgcGCGGUCGg- -3'
miRNA:   3'- -UGG-CG-GC-GCugGAGCuuUGCCAGUgc -5'
7272 5' -57.2 NC_001900.1 + 46208 0.67 0.568088
Target:  5'- gGCuCGCCGauACCUucguauucuugcCGucGCGGUCACGg -3'
miRNA:   3'- -UG-GCGGCgcUGGA------------GCuuUGCCAGUGC- -5'
7272 5' -57.2 NC_001900.1 + 20159 0.7 0.372587
Target:  5'- uCCGUcugCGCGGCCUCGucGCGGgugaGCGa -3'
miRNA:   3'- uGGCG---GCGCUGGAGCuuUGCCag--UGC- -5'
7272 5' -57.2 NC_001900.1 + 30293 0.67 0.568088
Target:  5'- cGCCuCCGCGACaUCcu--CGGUCGCGu -3'
miRNA:   3'- -UGGcGGCGCUGgAGcuuuGCCAGUGC- -5'
7272 5' -57.2 NC_001900.1 + 13677 0.7 0.381258
Target:  5'- cCCGCCGgGGuuUCUCcuGGCGGUCACa -3'
miRNA:   3'- uGGCGGCgCU--GGAGcuUUGCCAGUGc -5'
7272 5' -57.2 NC_001900.1 + 13719 0.68 0.505246
Target:  5'- cGCCGCgaugUGCGACCaCGAAGCGGaUCcucCGg -3'
miRNA:   3'- -UGGCG----GCGCUGGaGCUUUGCC-AGu--GC- -5'
7272 5' -57.2 NC_001900.1 + 36703 0.66 0.578779
Target:  5'- uCCGCCGCGACCgugCGuucuuguGCaGG-UACGg -3'
miRNA:   3'- uGGCGGCGCUGGa--GCuu-----UG-CCaGUGC- -5'
7272 5' -57.2 NC_001900.1 + 1184 0.66 0.611074
Target:  5'- aGCCGCCggaaGCGGCC--GggGCGGUUuagGCa -3'
miRNA:   3'- -UGGCGG----CGCUGGagCuuUGCCAG---UGc -5'
7272 5' -57.2 NC_001900.1 + 40031 0.7 0.381258
Target:  5'- aGCCGUCGcCGACgaUGu--CGGUCACGg -3'
miRNA:   3'- -UGGCGGC-GCUGgaGCuuuGCCAGUGC- -5'
7272 5' -57.2 NC_001900.1 + 40158 0.68 0.465049
Target:  5'- cGCUGCCGCGACUcugugCGGguGACGcGcCGCGa -3'
miRNA:   3'- -UGGCGGCGCUGGa----GCU--UUGC-CaGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.