miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7274 5' -55.4 NC_001900.1 + 33725 0.66 0.714392
Target:  5'- cGGCcaacGUCGACCCgGAc-GCCUACgAGGg -3'
miRNA:   3'- -CCGu---CGGUUGGGgCUcaUGGAUG-UCC- -5'
7274 5' -55.4 NC_001900.1 + 38849 0.66 0.714392
Target:  5'- cGGaAGcCCAGCCgCCGAGUAUUUGgAGa -3'
miRNA:   3'- -CCgUC-GGUUGG-GGCUCAUGGAUgUCc -5'
7274 5' -55.4 NC_001900.1 + 23602 0.66 0.703632
Target:  5'- --gAGCC-GCCCCGGaagagGCCUGCAGc -3'
miRNA:   3'- ccgUCGGuUGGGGCUca---UGGAUGUCc -5'
7274 5' -55.4 NC_001900.1 + 30646 0.66 0.702552
Target:  5'- uGGUcGaCCAucgaccuguaccACCCgGAGUACCUgacguacGCGGGg -3'
miRNA:   3'- -CCGuC-GGU------------UGGGgCUCAUGGA-------UGUCC- -5'
7274 5' -55.4 NC_001900.1 + 16755 0.66 0.692801
Target:  5'- gGGCGGCU--UCCUGAGccGCCUGCucGGc -3'
miRNA:   3'- -CCGUCGGuuGGGGCUCa-UGGAUGu-CC- -5'
7274 5' -55.4 NC_001900.1 + 11238 0.66 0.691715
Target:  5'- cGCGGCCAGCCUCGuuccagaGGUcGCC-ACGGu -3'
miRNA:   3'- cCGUCGGUUGGGGC-------UCA-UGGaUGUCc -5'
7274 5' -55.4 NC_001900.1 + 9980 0.66 0.681912
Target:  5'- gGGCAcGCCcaucAGCUCCGcAGUcGCCUGCAu- -3'
miRNA:   3'- -CCGU-CGG----UUGGGGC-UCA-UGGAUGUcc -5'
7274 5' -55.4 NC_001900.1 + 1849 0.66 0.681912
Target:  5'- cGGguGaCGGCCUCG---GCCUGCGGGc -3'
miRNA:   3'- -CCguCgGUUGGGGCucaUGGAUGUCC- -5'
7274 5' -55.4 NC_001900.1 + 8799 0.66 0.670975
Target:  5'- aGGCAuacGUCGACuCCUGGGgccggACCUACAa- -3'
miRNA:   3'- -CCGU---CGGUUG-GGGCUCa----UGGAUGUcc -5'
7274 5' -55.4 NC_001900.1 + 17574 0.66 0.670975
Target:  5'- -aCAGCgGACCaCCGAGcugacccaucGCCUGCAGa -3'
miRNA:   3'- ccGUCGgUUGG-GGCUCa---------UGGAUGUCc -5'
7274 5' -55.4 NC_001900.1 + 33796 0.66 0.660001
Target:  5'- uGCGGCCAcgGCCUCGAccaagGUGuCCUucguCGGGa -3'
miRNA:   3'- cCGUCGGU--UGGGGCU-----CAU-GGAu---GUCC- -5'
7274 5' -55.4 NC_001900.1 + 31249 0.67 0.649002
Target:  5'- gGGCAGCCAGCagguuGUGCUgcCAGGu -3'
miRNA:   3'- -CCGUCGGUUGgggcuCAUGGauGUCC- -5'
7274 5' -55.4 NC_001900.1 + 11305 0.67 0.649002
Target:  5'- aGGCAGUCGcACCCUGcGUGCC-ACuccucgauguGGGg -3'
miRNA:   3'- -CCGUCGGU-UGGGGCuCAUGGaUG----------UCC- -5'
7274 5' -55.4 NC_001900.1 + 35999 0.67 0.637987
Target:  5'- aGCcGCCGAUCCCGgAGUuCCUGggaGGGa -3'
miRNA:   3'- cCGuCGGUUGGGGC-UCAuGGAUg--UCC- -5'
7274 5' -55.4 NC_001900.1 + 21697 0.67 0.637987
Target:  5'- gGGUAGCCGAgCaCCGAuGUGCCgACGc- -3'
miRNA:   3'- -CCGUCGGUUgG-GGCU-CAUGGaUGUcc -5'
7274 5' -55.4 NC_001900.1 + 10257 0.67 0.615951
Target:  5'- aGGCGGCUcucugcGGCCCUGAugGCCUcaGCGGa -3'
miRNA:   3'- -CCGUCGG------UUGGGGCUcaUGGA--UGUCc -5'
7274 5' -55.4 NC_001900.1 + 27356 0.67 0.61485
Target:  5'- gGGCcagcacgaAGCCAGCCCCuccagagcccagaGGGUGCUacCGGGu -3'
miRNA:   3'- -CCG--------UCGGUUGGGG-------------CUCAUGGauGUCC- -5'
7274 5' -55.4 NC_001900.1 + 9877 0.68 0.593972
Target:  5'- cGGCGGCUcgAAUCCUGA-UGCUgaUGCAGGc -3'
miRNA:   3'- -CCGUCGG--UUGGGGCUcAUGG--AUGUCC- -5'
7274 5' -55.4 NC_001900.1 + 40500 0.68 0.593972
Target:  5'- aGGCA-CCGgcGCCCCGcuGGUGuuCCUGCAcGGg -3'
miRNA:   3'- -CCGUcGGU--UGGGGC--UCAU--GGAUGU-CC- -5'
7274 5' -55.4 NC_001900.1 + 23314 0.68 0.556939
Target:  5'- cGGCGGUCGGCCCCGGcuggGCCgaguucuauaccgGCGGcGg -3'
miRNA:   3'- -CCGUCGGUUGGGGCUca--UGGa------------UGUC-C- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.