miRNA display CGI


Results 1 - 20 of 33 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7275 3' -58.1 NC_001900.1 + 28659 0.66 0.559036
Target:  5'- cGGUGUUgCUC-ACCUGGaaggugaugcccuccUCGGCgauguaccaggGCAGCu -3'
miRNA:   3'- -CCGCGA-GAGuUGGACC---------------AGCCG-----------CGUCG- -5'
7275 3' -58.1 NC_001900.1 + 18039 0.66 0.554771
Target:  5'- cGGUGgUCcagaucgucaUCAACCUGGcugCGGcCGUGGUg -3'
miRNA:   3'- -CCGCgAG----------AGUUGGACCa--GCC-GCGUCG- -5'
7275 3' -58.1 NC_001900.1 + 29343 0.66 0.554771
Target:  5'- -aCGCUUUcCAACUucggGGUCGGUGCcgaucAGCa -3'
miRNA:   3'- ccGCGAGA-GUUGGa---CCAGCCGCG-----UCG- -5'
7275 3' -58.1 NC_001900.1 + 27602 0.66 0.548393
Target:  5'- cGCGCUCgaucccggaugcagCGAUCaGGUUcgagcaGGCGUAGCa -3'
miRNA:   3'- cCGCGAGa-------------GUUGGaCCAG------CCGCGUCG- -5'
7275 3' -58.1 NC_001900.1 + 1647 0.66 0.523124
Target:  5'- cGCGCUCUguACgaGGa-GGCGUGGUu -3'
miRNA:   3'- cCGCGAGAguUGgaCCagCCGCGUCG- -5'
7275 3' -58.1 NC_001900.1 + 35820 0.66 0.523124
Target:  5'- cGGCGUgUUCAccCCUGGcuaCGGC-CAGCg -3'
miRNA:   3'- -CCGCGaGAGUu-GGACCa--GCCGcGUCG- -5'
7275 3' -58.1 NC_001900.1 + 15548 0.66 0.512727
Target:  5'- cGGC-CUCUC-GCCgGG-CGGUGgAGCc -3'
miRNA:   3'- -CCGcGAGAGuUGGaCCaGCCGCgUCG- -5'
7275 3' -58.1 NC_001900.1 + 147 0.66 0.502415
Target:  5'- uGGUgGCUCaCAgcGCCUGGgcgaGGCGCucuAGCg -3'
miRNA:   3'- -CCG-CGAGaGU--UGGACCag--CCGCG---UCG- -5'
7275 3' -58.1 NC_001900.1 + 39118 0.66 0.502415
Target:  5'- cGGCGCUaugcgCUCcccgauGACCUGGaCGGCcgGgGGCu -3'
miRNA:   3'- -CCGCGA-----GAG------UUGGACCaGCCG--CgUCG- -5'
7275 3' -58.1 NC_001900.1 + 3842 0.67 0.492195
Target:  5'- cGGC-UUCUcCGGgCUGaUCGGCGCGGUg -3'
miRNA:   3'- -CCGcGAGA-GUUgGACcAGCCGCGUCG- -5'
7275 3' -58.1 NC_001900.1 + 24111 0.67 0.472051
Target:  5'- -cCGC-CUCGgcACCgaGGUUGGCGCGGg -3'
miRNA:   3'- ccGCGaGAGU--UGGa-CCAGCCGCGUCg -5'
7275 3' -58.1 NC_001900.1 + 1458 0.67 0.459183
Target:  5'- uGCGCUUggcauccgacggugaGugCUGGUCGcGgGCGGCg -3'
miRNA:   3'- cCGCGAGag-------------UugGACCAGC-CgCGUCG- -5'
7275 3' -58.1 NC_001900.1 + 18694 0.68 0.423622
Target:  5'- uGCGUucuUCUCGACCUGGauccgcuugCGcuccugcuccaGCGCAGCc -3'
miRNA:   3'- cCGCG---AGAGUUGGACCa--------GC-----------CGCGUCG- -5'
7275 3' -58.1 NC_001900.1 + 37167 0.68 0.423622
Target:  5'- --gGUUCUCGAacuugaaCUGGUCGGCGUacucgaccagAGCu -3'
miRNA:   3'- ccgCGAGAGUUg------GACCAGCCGCG----------UCG- -5'
7275 3' -58.1 NC_001900.1 + 44799 0.68 0.414297
Target:  5'- aGCGCagcggaagCUUGAUCUGcGUcaCGGCGCGGCc -3'
miRNA:   3'- cCGCGa-------GAGUUGGAC-CA--GCCGCGUCG- -5'
7275 3' -58.1 NC_001900.1 + 3544 0.68 0.405099
Target:  5'- cGGCGCUCggGGCC-GGUaaCGGCcuGguGCa -3'
miRNA:   3'- -CCGCGAGagUUGGaCCA--GCCG--CguCG- -5'
7275 3' -58.1 NC_001900.1 + 20956 0.68 0.396032
Target:  5'- cGGCGgUCgUCAACCUGGcUGGaGaCGGCc -3'
miRNA:   3'- -CCGCgAG-AGUUGGACCaGCCgC-GUCG- -5'
7275 3' -58.1 NC_001900.1 + 38713 0.68 0.396032
Target:  5'- cGGUGgUCgcccuggCGuaaCUGGUCGGuUGCAGCg -3'
miRNA:   3'- -CCGCgAGa------GUug-GACCAGCC-GCGUCG- -5'
7275 3' -58.1 NC_001900.1 + 35074 0.69 0.387095
Target:  5'- -cCGC-CUCGGCCaGGUCaGCGUAGUc -3'
miRNA:   3'- ccGCGaGAGUUGGaCCAGcCGCGUCG- -5'
7275 3' -58.1 NC_001900.1 + 33180 0.69 0.378293
Target:  5'- uGGCcgaucaCUCgcCAACCUGGgUGGCgGCAGCa -3'
miRNA:   3'- -CCGc-----GAGa-GUUGGACCaGCCG-CGUCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.