miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7275 3' -58.1 NC_001900.1 + 18684 0.69 0.352705
Target:  5'- aGGCGCagCUCGACCaGaUCaaGGCGCAGa -3'
miRNA:   3'- -CCGCGa-GAGUUGGaCcAG--CCGCGUCg -5'
7275 3' -58.1 NC_001900.1 + 45000 0.69 0.361096
Target:  5'- cGUGCgagCacgUCAACCUGGUCGGCcuuCAGa -3'
miRNA:   3'- cCGCGa--G---AGUUGGACCAGCCGc--GUCg -5'
7275 3' -58.1 NC_001900.1 + 35074 0.69 0.387095
Target:  5'- -cCGC-CUCGGCCaGGUCaGCGUAGUc -3'
miRNA:   3'- ccGCGaGAGUUGGaCCAGcCGCGUCG- -5'
7275 3' -58.1 NC_001900.1 + 5388 0.7 0.331538
Target:  5'- uGGUGCagUCGGCCUGGaugaGGCcgucacgcacggccgGCAGCa -3'
miRNA:   3'- -CCGCGagAGUUGGACCag--CCG---------------CGUCG- -5'
7275 3' -58.1 NC_001900.1 + 13418 0.7 0.312842
Target:  5'- uGCGCUC--GACCUGuucgaGUCGGCGCucgaucAGCg -3'
miRNA:   3'- cCGCGAGagUUGGAC-----CAGCCGCG------UCG- -5'
7275 3' -58.1 NC_001900.1 + 43096 0.7 0.297881
Target:  5'- -cCGCUUgCGGCCUGGcCGGUucaGCAGCc -3'
miRNA:   3'- ccGCGAGaGUUGGACCaGCCG---CGUCG- -5'
7275 3' -58.1 NC_001900.1 + 12990 0.7 0.328366
Target:  5'- aGGCGUUCgucgcucugacCAACgUGGUCaGCgGCGGCg -3'
miRNA:   3'- -CCGCGAGa----------GUUGgACCAGcCG-CGUCG- -5'
7275 3' -58.1 NC_001900.1 + 8450 0.71 0.269637
Target:  5'- cGGCGCaaguucCUCAACCaGGUCaaCGCGGCc -3'
miRNA:   3'- -CCGCGa-----GAGUUGGaCCAGccGCGUCG- -5'
7275 3' -58.1 NC_001900.1 + 18133 0.71 0.283481
Target:  5'- uGGCGUcCUggCAGaCUGcGUCGGCGCAGUc -3'
miRNA:   3'- -CCGCGaGA--GUUgGAC-CAGCCGCGUCG- -5'
7275 3' -58.1 NC_001900.1 + 24937 0.72 0.242967
Target:  5'- aGGCaGCUCaccccagugguaUCGgguacgcACCUGGUggcggCGGCGCAGCc -3'
miRNA:   3'- -CCG-CGAG------------AGU-------UGGACCA-----GCCGCGUCG- -5'
7275 3' -58.1 NC_001900.1 + 18759 0.72 0.224872
Target:  5'- uGCGC-CUUGAUCUGGUCGaGCugcgccuGCAGCg -3'
miRNA:   3'- cCGCGaGAGUUGGACCAGC-CG-------CGUCG- -5'
7275 3' -58.1 NC_001900.1 + 3765 0.77 0.0999
Target:  5'- cGGCGCUCguUCGAUgaGGUCGGCGUcGUc -3'
miRNA:   3'- -CCGCGAG--AGUUGgaCCAGCCGCGuCG- -5'
7275 3' -58.1 NC_001900.1 + 6303 1.12 0.000277
Target:  5'- uGGCGCUCUCAACCUGGUCGGCGCAGCc -3'
miRNA:   3'- -CCGCGAGAGUUGGACCAGCCGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.