miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7275 5' -55.3 NC_001900.1 + 29087 0.66 0.717889
Target:  5'- aCACcGCCGaUGUCcccgAAGGUCGGCCu- -3'
miRNA:   3'- gGUGcCGGCgACAG----UUCCAGUUGGuc -5'
7275 5' -55.3 NC_001900.1 + 43277 0.66 0.717889
Target:  5'- gCGUGGCCGauguguagGUCgGAGGUgAACCAGa -3'
miRNA:   3'- gGUGCCGGCga------CAG-UUCCAgUUGGUC- -5'
7275 5' -55.3 NC_001900.1 + 29003 0.66 0.717889
Target:  5'- -gAUGGCCGaCgacGUaAAGGUCAACUGGg -3'
miRNA:   3'- ggUGCCGGC-Ga--CAgUUCCAGUUGGUC- -5'
7275 5' -55.3 NC_001900.1 + 39723 0.66 0.707124
Target:  5'- gCGCGaugagaucaGCCGCcagcUCcGGGUCAGCCAGc -3'
miRNA:   3'- gGUGC---------CGGCGac--AGuUCCAGUUGGUC- -5'
7275 5' -55.3 NC_001900.1 + 21312 0.66 0.704961
Target:  5'- gCACGGCgaGCUGgcuguugaugaaCGAGGUCAGCa-- -3'
miRNA:   3'- gGUGCCGg-CGACa-----------GUUCCAGUUGguc -5'
7275 5' -55.3 NC_001900.1 + 6643 0.66 0.700628
Target:  5'- uCCAgGGCUGCgUGUgcGGGUCGaacggcuggcuguagGCCGGu -3'
miRNA:   3'- -GGUgCCGGCG-ACAguUCCAGU---------------UGGUC- -5'
7275 5' -55.3 NC_001900.1 + 15172 0.66 0.696284
Target:  5'- aCCAgcCGGUgGCUccaGUCcAGGUCGACgGGu -3'
miRNA:   3'- -GGU--GCCGgCGA---CAGuUCCAGUUGgUC- -5'
7275 5' -55.3 NC_001900.1 + 47454 0.66 0.685381
Target:  5'- cCCuuCGGUgGCUGUCAA-GUCAGCgGa -3'
miRNA:   3'- -GGu-GCCGgCGACAGUUcCAGUUGgUc -5'
7275 5' -55.3 NC_001900.1 + 4110 0.66 0.685381
Target:  5'- aCCGCuGCCGCUGgCAGuuGGUucaucugcCGACCGGc -3'
miRNA:   3'- -GGUGcCGGCGACaGUU--CCA--------GUUGGUC- -5'
7275 5' -55.3 NC_001900.1 + 38110 0.66 0.685381
Target:  5'- gCCuCGGCguugCGC-GUC-AGGUCGACCAc -3'
miRNA:   3'- -GGuGCCG----GCGaCAGuUCCAGUUGGUc -5'
7275 5' -55.3 NC_001900.1 + 599 0.66 0.685381
Target:  5'- uCCA-GGCCGC----GAGGUUGGCCGGa -3'
miRNA:   3'- -GGUgCCGGCGacagUUCCAGUUGGUC- -5'
7275 5' -55.3 NC_001900.1 + 39023 0.66 0.682099
Target:  5'- cCCuCGGCCGCaGUCAguuacgaccuccaaGGGUuCAACUg- -3'
miRNA:   3'- -GGuGCCGGCGaCAGU--------------UCCA-GUUGGuc -5'
7275 5' -55.3 NC_001900.1 + 37328 0.67 0.652409
Target:  5'- aCgACGGCC-CUGUCGgcguccacgaAGG-CAACCAc -3'
miRNA:   3'- -GgUGCCGGcGACAGU----------UCCaGUUGGUc -5'
7275 5' -55.3 NC_001900.1 + 30570 0.67 0.652409
Target:  5'- uCCG-GGUgGUacagGUCGAuGGUCGACCAGa -3'
miRNA:   3'- -GGUgCCGgCGa---CAGUU-CCAGUUGGUC- -5'
7275 5' -55.3 NC_001900.1 + 34162 0.67 0.630316
Target:  5'- -gAUGGCCGCUG---AGGUCGACa-- -3'
miRNA:   3'- ggUGCCGGCGACaguUCCAGUUGguc -5'
7275 5' -55.3 NC_001900.1 + 37591 0.67 0.629211
Target:  5'- cCCACaGgCGCUcguuguaGUCGGGGUaccgCGACCAGa -3'
miRNA:   3'- -GGUGcCgGCGA-------CAGUUCCA----GUUGGUC- -5'
7275 5' -55.3 NC_001900.1 + 15111 0.68 0.586224
Target:  5'- gCCAcCGGCUG--GUCGAGcGUCGGCCAc -3'
miRNA:   3'- -GGU-GCCGGCgaCAGUUC-CAGUUGGUc -5'
7275 5' -55.3 NC_001900.1 + 18127 0.68 0.564374
Target:  5'- aCCACGGCCGCaGcCA-GGUUgaugacgaucugGACCAc -3'
miRNA:   3'- -GGUGCCGGCGaCaGUuCCAG------------UUGGUc -5'
7275 5' -55.3 NC_001900.1 + 16528 0.68 0.564374
Target:  5'- gCACGGaUCuCcGUCAAGGUCAGCCc- -3'
miRNA:   3'- gGUGCC-GGcGaCAGUUCCAGUUGGuc -5'
7275 5' -55.3 NC_001900.1 + 46242 0.68 0.542745
Target:  5'- gUCACgGGUgGCaGUCAAGGUgAACaCAGg -3'
miRNA:   3'- -GGUG-CCGgCGaCAGUUCCAgUUG-GUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.