miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7279 5' -57.9 NC_001900.1 + 34161 0.66 0.538662
Target:  5'- aUGGCCGC--UGAGGUcgacagAGCGGCCg-- -3'
miRNA:   3'- cACCGGCGuaGCUCCG------UCGUUGGagg -5'
7279 5' -57.9 NC_001900.1 + 38179 0.66 0.538662
Target:  5'- -cGGUgGCA-CG-GGCGGCAACCcggCUg -3'
miRNA:   3'- caCCGgCGUaGCuCCGUCGUUGGa--GG- -5'
7279 5' -57.9 NC_001900.1 + 47307 0.66 0.528045
Target:  5'- -cGGUCGCGUCcGGGCAGgAgaACCcuugCCc -3'
miRNA:   3'- caCCGGCGUAGcUCCGUCgU--UGGa---GG- -5'
7279 5' -57.9 NC_001900.1 + 19598 0.66 0.528045
Target:  5'- -cGGCCGCGagCaGGGCGGgcuCAACC-CCa -3'
miRNA:   3'- caCCGGCGUa-GcUCCGUC---GUUGGaGG- -5'
7279 5' -57.9 NC_001900.1 + 6745 0.66 0.517506
Target:  5'- uGUGGCCGUcgGUCGAgaaGGguGUcGCCgagCUg -3'
miRNA:   3'- -CACCGGCG--UAGCU---CCguCGuUGGa--GG- -5'
7279 5' -57.9 NC_001900.1 + 34268 0.66 0.516457
Target:  5'- -cGG-CGCAUCGguguuGGGCaccucggAGUGGCCUCCu -3'
miRNA:   3'- caCCgGCGUAGC-----UCCG-------UCGUUGGAGG- -5'
7279 5' -57.9 NC_001900.1 + 4039 0.66 0.507053
Target:  5'- cUGGCCGUucacgAUCGAcGGC-GUGACCgCCu -3'
miRNA:   3'- cACCGGCG-----UAGCU-CCGuCGUUGGaGG- -5'
7279 5' -57.9 NC_001900.1 + 37083 0.66 0.507053
Target:  5'- gGUGGCCGUgcGUCGAGaucCAGCccggAGCCaCCu -3'
miRNA:   3'- -CACCGGCG--UAGCUCc--GUCG----UUGGaGG- -5'
7279 5' -57.9 NC_001900.1 + 17195 0.66 0.507053
Target:  5'- cGUGGUguCGCAgggucCGGGGCuccAGCAG-CUCCa -3'
miRNA:   3'- -CACCG--GCGUa----GCUCCG---UCGUUgGAGG- -5'
7279 5' -57.9 NC_001900.1 + 43688 0.66 0.507053
Target:  5'- -cGcGCCGCAUgaGAcGGCGGCGGuCCUgCg -3'
miRNA:   3'- caC-CGGCGUAg-CU-CCGUCGUU-GGAgG- -5'
7279 5' -57.9 NC_001900.1 + 34959 0.66 0.507053
Target:  5'- -gGGUCGCAagcugaagacguUCGGcGGCA-CGGCCUCUg -3'
miRNA:   3'- caCCGGCGU------------AGCU-CCGUcGUUGGAGG- -5'
7279 5' -57.9 NC_001900.1 + 2437 0.66 0.49669
Target:  5'- gGUGGCUGUgugagGUCGAcGGCcccGGCuGCgUCCg -3'
miRNA:   3'- -CACCGGCG-----UAGCU-CCG---UCGuUGgAGG- -5'
7279 5' -57.9 NC_001900.1 + 18265 0.66 0.49669
Target:  5'- cUGGCUG-AUCGAGGCgGGCAAgaacguCgUCCa -3'
miRNA:   3'- cACCGGCgUAGCUCCG-UCGUU------GgAGG- -5'
7279 5' -57.9 NC_001900.1 + 3131 0.67 0.486424
Target:  5'- -cGGUCGgGUCGGcGGguGCccgcucGAUCUCCa -3'
miRNA:   3'- caCCGGCgUAGCU-CCguCG------UUGGAGG- -5'
7279 5' -57.9 NC_001900.1 + 21556 0.67 0.486424
Target:  5'- aUGGCCGCGaacgccgaGAGGguGaacGCCUUCa -3'
miRNA:   3'- cACCGGCGUag------CUCCguCgu-UGGAGG- -5'
7279 5' -57.9 NC_001900.1 + 7483 0.67 0.446424
Target:  5'- -gGGCCGauaaugUGAGGCggagacggGGCAAgCUCCg -3'
miRNA:   3'- caCCGGCgua---GCUCCG--------UCGUUgGAGG- -5'
7279 5' -57.9 NC_001900.1 + 46103 0.67 0.446424
Target:  5'- -cGGCuuCGCcgCGaAGGUAGauguGACCUCCa -3'
miRNA:   3'- caCCG--GCGuaGC-UCCGUCg---UUGGAGG- -5'
7279 5' -57.9 NC_001900.1 + 33304 0.67 0.446424
Target:  5'- -cGGCCGg--CGcAGGCcGC-ACCUCCa -3'
miRNA:   3'- caCCGGCguaGC-UCCGuCGuUGGAGG- -5'
7279 5' -57.9 NC_001900.1 + 10829 0.67 0.445448
Target:  5'- -cGGagcuuccCCGCAacgaGAGGUugcggAGCGACCUCCa -3'
miRNA:   3'- caCC-------GGCGUag--CUCCG-----UCGUUGGAGG- -5'
7279 5' -57.9 NC_001900.1 + 13773 0.68 0.427123
Target:  5'- cUGG-CGCAUCGAGuuCGGCAACgUCUc -3'
miRNA:   3'- cACCgGCGUAGCUCc-GUCGUUGgAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.