Results 21 - 40 of 45 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
7279 | 5' | -57.9 | NC_001900.1 | + | 19598 | 0.66 | 0.528045 |
Target: 5'- -cGGCCGCGagCaGGGCGGgcuCAACC-CCa -3' miRNA: 3'- caCCGGCGUa-GcUCCGUC---GUUGGaGG- -5' |
|||||||
7279 | 5' | -57.9 | NC_001900.1 | + | 21556 | 0.67 | 0.486424 |
Target: 5'- aUGGCCGCGaacgccgaGAGGguGaacGCCUUCa -3' miRNA: 3'- cACCGGCGUag------CUCCguCgu-UGGAGG- -5' |
|||||||
7279 | 5' | -57.9 | NC_001900.1 | + | 23065 | 0.74 | 0.164037 |
Target: 5'- aGUGGCUGCGggacaccgCGAGccaGGUAGCCUCCg -3' miRNA: 3'- -CACCGGCGUa-------GCUCcg-UCGUUGGAGG- -5' |
|||||||
7279 | 5' | -57.9 | NC_001900.1 | + | 23447 | 0.7 | 0.322507 |
Target: 5'- aUGGCCGUccuugAUCGc-GUAGUAGCCUCUg -3' miRNA: 3'- cACCGGCG-----UAGCucCGUCGUUGGAGG- -5' |
|||||||
7279 | 5' | -57.9 | NC_001900.1 | + | 23527 | 0.68 | 0.427123 |
Target: 5'- -aGGCUGCAggccucuucCGGGGCGGCucACacaUCCg -3' miRNA: 3'- caCCGGCGUa--------GCUCCGUCGu-UGg--AGG- -5' |
|||||||
7279 | 5' | -57.9 | NC_001900.1 | + | 23605 | 0.71 | 0.270891 |
Target: 5'- uGUGaGCCGCcccggaaGAGGCcuGCAGCCUCa -3' miRNA: 3'- -CAC-CGGCGuag----CUCCGu-CGUUGGAGg -5' |
|||||||
7279 | 5' | -57.9 | NC_001900.1 | + | 25173 | 0.68 | 0.427123 |
Target: 5'- -gGGCCGgGUaCGAGGCG--AGCCUgCCg -3' miRNA: 3'- caCCGGCgUA-GCUCCGUcgUUGGA-GG- -5' |
|||||||
7279 | 5' | -57.9 | NC_001900.1 | + | 25670 | 0.69 | 0.363666 |
Target: 5'- --cGCCGCGacgUGAGGCGGCAcggucACCggCCg -3' miRNA: 3'- cacCGGCGUa--GCUCCGUCGU-----UGGa-GG- -5' |
|||||||
7279 | 5' | -57.9 | NC_001900.1 | + | 33134 | 0.68 | 0.408325 |
Target: 5'- gGUGGCgGCGguagCGGcGGCGGUGGCCagCa -3' miRNA: 3'- -CACCGgCGUa---GCU-CCGUCGUUGGagG- -5' |
|||||||
7279 | 5' | -57.9 | NC_001900.1 | + | 33304 | 0.67 | 0.446424 |
Target: 5'- -cGGCCGg--CGcAGGCcGC-ACCUCCa -3' miRNA: 3'- caCCGGCguaGC-UCCGuCGuUGGAGG- -5' |
|||||||
7279 | 5' | -57.9 | NC_001900.1 | + | 34085 | 0.69 | 0.372323 |
Target: 5'- -cGGCCGCucuGUCGAccucaGCGGCcAUCUCCc -3' miRNA: 3'- caCCGGCG---UAGCUc----CGUCGuUGGAGG- -5' |
|||||||
7279 | 5' | -57.9 | NC_001900.1 | + | 34161 | 0.66 | 0.538662 |
Target: 5'- aUGGCCGC--UGAGGUcgacagAGCGGCCg-- -3' miRNA: 3'- cACCGGCGuaGCUCCG------UCGUUGGagg -5' |
|||||||
7279 | 5' | -57.9 | NC_001900.1 | + | 34268 | 0.66 | 0.516457 |
Target: 5'- -cGG-CGCAUCGguguuGGGCaccucggAGUGGCCUCCu -3' miRNA: 3'- caCCgGCGUAGC-----UCCG-------UCGUUGGAGG- -5' |
|||||||
7279 | 5' | -57.9 | NC_001900.1 | + | 34959 | 0.66 | 0.507053 |
Target: 5'- -gGGUCGCAagcugaagacguUCGGcGGCA-CGGCCUCUg -3' miRNA: 3'- caCCGGCGU------------AGCU-CCGUcGUUGGAGG- -5' |
|||||||
7279 | 5' | -57.9 | NC_001900.1 | + | 36987 | 0.7 | 0.314704 |
Target: 5'- uGUGGUCG-AUgGAGGuCGGCAACCUg- -3' miRNA: 3'- -CACCGGCgUAgCUCC-GUCGUUGGAgg -5' |
|||||||
7279 | 5' | -57.9 | NC_001900.1 | + | 37083 | 0.66 | 0.507053 |
Target: 5'- gGUGGCCGUgcGUCGAGaucCAGCccggAGCCaCCu -3' miRNA: 3'- -CACCGGCG--UAGCUCc--GUCG----UUGGaGG- -5' |
|||||||
7279 | 5' | -57.9 | NC_001900.1 | + | 37284 | 0.72 | 0.244498 |
Target: 5'- -cGGcCCGCAgCGGGGcCAGgAACCUCg -3' miRNA: 3'- caCC-GGCGUaGCUCC-GUCgUUGGAGg -5' |
|||||||
7279 | 5' | -57.9 | NC_001900.1 | + | 38179 | 0.66 | 0.538662 |
Target: 5'- -cGGUgGCA-CG-GGCGGCAACCcggCUg -3' miRNA: 3'- caCCGgCGUaGCuCCGUCGUUGGa--GG- -5' |
|||||||
7279 | 5' | -57.9 | NC_001900.1 | + | 40333 | 0.69 | 0.372323 |
Target: 5'- uUGGCCGCGUCGAGu--GCGAUgaCUCg -3' miRNA: 3'- cACCGGCGUAGCUCcguCGUUG--GAGg -5' |
|||||||
7279 | 5' | -57.9 | NC_001900.1 | + | 43688 | 0.66 | 0.507053 |
Target: 5'- -cGcGCCGCAUgaGAcGGCGGCGGuCCUgCg -3' miRNA: 3'- caC-CGGCGUAg-CU-CCGUCGUU-GGAgG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home