miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7279 5' -57.9 NC_001900.1 + 19598 0.66 0.528045
Target:  5'- -cGGCCGCGagCaGGGCGGgcuCAACC-CCa -3'
miRNA:   3'- caCCGGCGUa-GcUCCGUC---GUUGGaGG- -5'
7279 5' -57.9 NC_001900.1 + 21556 0.67 0.486424
Target:  5'- aUGGCCGCGaacgccgaGAGGguGaacGCCUUCa -3'
miRNA:   3'- cACCGGCGUag------CUCCguCgu-UGGAGG- -5'
7279 5' -57.9 NC_001900.1 + 23065 0.74 0.164037
Target:  5'- aGUGGCUGCGggacaccgCGAGccaGGUAGCCUCCg -3'
miRNA:   3'- -CACCGGCGUa-------GCUCcg-UCGUUGGAGG- -5'
7279 5' -57.9 NC_001900.1 + 23447 0.7 0.322507
Target:  5'- aUGGCCGUccuugAUCGc-GUAGUAGCCUCUg -3'
miRNA:   3'- cACCGGCG-----UAGCucCGUCGUUGGAGG- -5'
7279 5' -57.9 NC_001900.1 + 23527 0.68 0.427123
Target:  5'- -aGGCUGCAggccucuucCGGGGCGGCucACacaUCCg -3'
miRNA:   3'- caCCGGCGUa--------GCUCCGUCGu-UGg--AGG- -5'
7279 5' -57.9 NC_001900.1 + 23605 0.71 0.270891
Target:  5'- uGUGaGCCGCcccggaaGAGGCcuGCAGCCUCa -3'
miRNA:   3'- -CAC-CGGCGuag----CUCCGu-CGUUGGAGg -5'
7279 5' -57.9 NC_001900.1 + 25173 0.68 0.427123
Target:  5'- -gGGCCGgGUaCGAGGCG--AGCCUgCCg -3'
miRNA:   3'- caCCGGCgUA-GCUCCGUcgUUGGA-GG- -5'
7279 5' -57.9 NC_001900.1 + 25670 0.69 0.363666
Target:  5'- --cGCCGCGacgUGAGGCGGCAcggucACCggCCg -3'
miRNA:   3'- cacCGGCGUa--GCUCCGUCGU-----UGGa-GG- -5'
7279 5' -57.9 NC_001900.1 + 33134 0.68 0.408325
Target:  5'- gGUGGCgGCGguagCGGcGGCGGUGGCCagCa -3'
miRNA:   3'- -CACCGgCGUa---GCU-CCGUCGUUGGagG- -5'
7279 5' -57.9 NC_001900.1 + 33304 0.67 0.446424
Target:  5'- -cGGCCGg--CGcAGGCcGC-ACCUCCa -3'
miRNA:   3'- caCCGGCguaGC-UCCGuCGuUGGAGG- -5'
7279 5' -57.9 NC_001900.1 + 34085 0.69 0.372323
Target:  5'- -cGGCCGCucuGUCGAccucaGCGGCcAUCUCCc -3'
miRNA:   3'- caCCGGCG---UAGCUc----CGUCGuUGGAGG- -5'
7279 5' -57.9 NC_001900.1 + 34161 0.66 0.538662
Target:  5'- aUGGCCGC--UGAGGUcgacagAGCGGCCg-- -3'
miRNA:   3'- cACCGGCGuaGCUCCG------UCGUUGGagg -5'
7279 5' -57.9 NC_001900.1 + 34268 0.66 0.516457
Target:  5'- -cGG-CGCAUCGguguuGGGCaccucggAGUGGCCUCCu -3'
miRNA:   3'- caCCgGCGUAGC-----UCCG-------UCGUUGGAGG- -5'
7279 5' -57.9 NC_001900.1 + 34959 0.66 0.507053
Target:  5'- -gGGUCGCAagcugaagacguUCGGcGGCA-CGGCCUCUg -3'
miRNA:   3'- caCCGGCGU------------AGCU-CCGUcGUUGGAGG- -5'
7279 5' -57.9 NC_001900.1 + 36987 0.7 0.314704
Target:  5'- uGUGGUCG-AUgGAGGuCGGCAACCUg- -3'
miRNA:   3'- -CACCGGCgUAgCUCC-GUCGUUGGAgg -5'
7279 5' -57.9 NC_001900.1 + 37083 0.66 0.507053
Target:  5'- gGUGGCCGUgcGUCGAGaucCAGCccggAGCCaCCu -3'
miRNA:   3'- -CACCGGCG--UAGCUCc--GUCG----UUGGaGG- -5'
7279 5' -57.9 NC_001900.1 + 37284 0.72 0.244498
Target:  5'- -cGGcCCGCAgCGGGGcCAGgAACCUCg -3'
miRNA:   3'- caCC-GGCGUaGCUCC-GUCgUUGGAGg -5'
7279 5' -57.9 NC_001900.1 + 38179 0.66 0.538662
Target:  5'- -cGGUgGCA-CG-GGCGGCAACCcggCUg -3'
miRNA:   3'- caCCGgCGUaGCuCCGUCGUUGGa--GG- -5'
7279 5' -57.9 NC_001900.1 + 40333 0.69 0.372323
Target:  5'- uUGGCCGCGUCGAGu--GCGAUgaCUCg -3'
miRNA:   3'- cACCGGCGUAGCUCcguCGUUG--GAGg -5'
7279 5' -57.9 NC_001900.1 + 43688 0.66 0.507053
Target:  5'- -cGcGCCGCAUgaGAcGGCGGCGGuCCUgCg -3'
miRNA:   3'- caC-CGGCGUAg-CU-CCGUCGUU-GGAgG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.