miRNA display CGI


Results 21 - 40 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
7279 5' -57.9 NC_001900.1 + 19598 0.66 0.528045
Target:  5'- -cGGCCGCGagCaGGGCGGgcuCAACC-CCa -3'
miRNA:   3'- caCCGGCGUa-GcUCCGUC---GUUGGaGG- -5'
7279 5' -57.9 NC_001900.1 + 47307 0.66 0.528045
Target:  5'- -cGGUCGCGUCcGGGCAGgAgaACCcuugCCc -3'
miRNA:   3'- caCCGGCGUAGcUCCGUCgU--UGGa---GG- -5'
7279 5' -57.9 NC_001900.1 + 38179 0.66 0.538662
Target:  5'- -cGGUgGCA-CG-GGCGGCAACCcggCUg -3'
miRNA:   3'- caCCGgCGUaGCuCCGUCGUUGGa--GG- -5'
7279 5' -57.9 NC_001900.1 + 5985 0.75 0.142222
Target:  5'- -gGGCCGCccgcuacGUCGAGGaaucggcgcgagcCGGUGACCUCCg -3'
miRNA:   3'- caCCGGCG-------UAGCUCC-------------GUCGUUGGAGG- -5'
7279 5' -57.9 NC_001900.1 + 16988 0.75 0.136819
Target:  5'- uGUGGUCGCAcUCGgcauggacggcaucaAGGCGGCAGCCgagaCCa -3'
miRNA:   3'- -CACCGGCGU-AGC---------------UCCGUCGUUGGa---GG- -5'
7279 5' -57.9 NC_001900.1 + 6113 0.76 0.121044
Target:  5'- cUGGCC-CAgaUCGAGGCAGCcAACC-CCg -3'
miRNA:   3'- cACCGGcGU--AGCUCCGUCG-UUGGaGG- -5'
7279 5' -57.9 NC_001900.1 + 7968 1.01 0.0017
Target:  5'- gGUGGCCGCAUCGAGGC-GCAACCUCCu -3'
miRNA:   3'- -CACCGGCGUAGCUCCGuCGUUGGAGG- -5'
7279 5' -57.9 NC_001900.1 + 34268 0.66 0.516457
Target:  5'- -cGG-CGCAUCGguguuGGGCaccucggAGUGGCCUCCu -3'
miRNA:   3'- caCCgGCGUAGC-----UCCG-------UCGUUGGAGG- -5'
7279 5' -57.9 NC_001900.1 + 34161 0.66 0.538662
Target:  5'- aUGGCCGC--UGAGGUcgacagAGCGGCCg-- -3'
miRNA:   3'- cACCGGCGuaGCUCCG------UCGUUGGagg -5'
7279 5' -57.9 NC_001900.1 + 34959 0.66 0.507053
Target:  5'- -gGGUCGCAagcugaagacguUCGGcGGCA-CGGCCUCUg -3'
miRNA:   3'- caCCGGCGU------------AGCU-CCGUcGUUGGAGG- -5'
7279 5' -57.9 NC_001900.1 + 43688 0.66 0.507053
Target:  5'- -cGcGCCGCAUgaGAcGGCGGCGGuCCUgCg -3'
miRNA:   3'- caC-CGGCGUAg-CU-CCGUCGUU-GGAgG- -5'
7279 5' -57.9 NC_001900.1 + 21556 0.67 0.486424
Target:  5'- aUGGCCGCGaacgccgaGAGGguGaacGCCUUCa -3'
miRNA:   3'- cACCGGCGUag------CUCCguCgu-UGGAGG- -5'
7279 5' -57.9 NC_001900.1 + 3131 0.67 0.486424
Target:  5'- -cGGUCGgGUCGGcGGguGCccgcucGAUCUCCa -3'
miRNA:   3'- caCCGGCgUAGCU-CCguCG------UUGGAGG- -5'
7279 5' -57.9 NC_001900.1 + 7483 0.67 0.446424
Target:  5'- -gGGCCGauaaugUGAGGCggagacggGGCAAgCUCCg -3'
miRNA:   3'- caCCGGCgua---GCUCCG--------UCGUUgGAGG- -5'
7279 5' -57.9 NC_001900.1 + 33134 0.68 0.408325
Target:  5'- gGUGGCgGCGguagCGGcGGCGGUGGCCagCa -3'
miRNA:   3'- -CACCGgCGUa---GCU-CCGUCGUUGGagG- -5'
7279 5' -57.9 NC_001900.1 + 11719 0.68 0.399122
Target:  5'- uUGGCaacc-CGAGcaGCAGCGGCCUCCu -3'
miRNA:   3'- cACCGgcguaGCUC--CGUCGUUGGAGG- -5'
7279 5' -57.9 NC_001900.1 + 44885 0.68 0.390052
Target:  5'- aUGGCCGCGccgUGAcGCAGaucaAGCUUCCg -3'
miRNA:   3'- cACCGGCGUa--GCUcCGUCg---UUGGAGG- -5'
7279 5' -57.9 NC_001900.1 + 1249 0.7 0.322507
Target:  5'- -cGGCCGCuUCc-GGCGGCccaccgccGCCUCCa -3'
miRNA:   3'- caCCGGCGuAGcuCCGUCGu-------UGGAGG- -5'
7279 5' -57.9 NC_001900.1 + 23447 0.7 0.322507
Target:  5'- aUGGCCGUccuugAUCGc-GUAGUAGCCUCUg -3'
miRNA:   3'- cACCGGCG-----UAGCucCGUCGUUGGAGG- -5'
7279 5' -57.9 NC_001900.1 + 1433 0.7 0.314704
Target:  5'- cUGGUCGC----GGGCGGCGACCgCCa -3'
miRNA:   3'- cACCGGCGuagcUCCGUCGUUGGaGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.